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BaseInfo

ncRNA ID novel_gma_miR1591
Species Glycine max
Class miRNA
Genome position Chr12:39124694-39124779 [+]
Reference genome Glycine_max_v2.0
Source SRR1451648
Length 21
Mature sequence(if miRNA) 66 - UGAAACUCUAAUUUUGAUUGG - 86
Stem-loop(if miRNA) --             C     C     CA     ---C    UA
  AAUCAAAAUUGGA UUUUA UUUGG  AUCUA    GUAA  A
  ||||||||||||| ||||| |||||  |||||    ||||  A
  UUAGUUUUAAUCU AAAGU GAAUC  UGGAU    CGUU  A
GG             C     A     AC     AUUA    UG
Stem-loop sequence AAUCAAAAUUGGACUUUUACUUUGGCAAUCUACGUAAUAAAAGUUUGCAUUAUAGGUCACUAAGAUGAAACUCUAAUUUUGAUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014767498.1
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  =||||||=|||||||||||||
targets:652   UCAAUCAGAAUUAGAGUUUCA   672

1.0 PREDICTED: Glycine max uncharacterized LOC102659579 (LOC102659579), mRNA uncharacterized LOC102659579(LOC102659579) coding protein psRNATarget
XM_003542316.3
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  |=|||||||||||||||||=|
targets:1205   CUAAUCAAAAUUAGAGUUUUA   1225

1.5 PREDICTED: Glycine max uncharacterized LOC100800301 (LOC100800301), mRNA uncharacterized LOC100800301(LOC100800301) coding protein psRNATarget
XM_003554918.3
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  =|||||||||||=||||||||
targets:1544   UCAAUCAAAAUUGGAGUUUCA   1564

1.5 PREDICTED: Glycine max uncharacterized LOC100811822 (LOC100811822), mRNA uncharacterized LOC100811822(LOC100811822) coding protein psRNATarget
XM_003517602.3
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  =|||||||||||=||||||||
targets:3098   UCAAUCAAAAUUGGAGUUUCA   3118

1.5 PREDICTED: Glycine max disease resistance protein RPM1-like (LOC100805346), mRNA disease resistance protein RPM1-like(LOC100805346) coding protein psRNATarget
XM_003535467.3
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  =||||||||||||||*|||||
targets:905   UCAAUCAAAAUUAGAAUUUCA   925

1.5 PREDICTED: Glycine max transcription factor TT2-like (LOC100794570), mRNA transcription factor TT2-like(LOC100794570) coding protein psRNATarget
XM_003555401.3
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  ==|||||||||||||*|||||
targets:894   UUAAUCAAAAUUAGAAUUUCA   914

1.5 PREDICTED: Glycine max transcription factor WER-like (LOC100780809), mRNA transcription factor WER-like(LOC100780809) coding protein psRNATarget
XM_006573286.2
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  =|*||||=|||||||||||||
targets:2092   UCUAUCAGAAUUAGAGUUUCA   2112

2.0 PREDICTED: Glycine max lactosylceramide 4-alpha-galactosyltransferase-like (LOC100781975), mRNA lactosylceramide 4-alpha-galactosyltransferase-like(LOC100781975) coding protein psRNATarget
XM_006592950.2
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  ==*|||||||||||||||||*
targets:898   UUUAUCAAAAUUAGAGUUUCC   918

2.0 PREDICTED: Glycine max uncharacterized LOC100782625 (LOC100782625), mRNA uncharacterized LOC100782625(LOC100782625) coding protein psRNATarget
XM_003538963.3
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  ==*|||||||||||||||||*
targets:1134   UUUAUCAAAAUUAGAGUUUCC   1154

2.0 PREDICTED: Glycine max uncharacterized LOC100793915 (LOC100793915), mRNA uncharacterized LOC100793915(LOC100793915) coding protein psRNATarget
DQ792721.1
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  |||||||||||||||||||=*
targets:724   CCAAUCAAAAUUAGAGUUUUC   744

2.5 Glycine max transcription factor bZIP48 (bZIP48) mRNA, partial cds NA coding protein psRNATarget
XM_003539909.3
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  |||||||||||||||||||=*
targets:1800   CCAAUCAAAAUUAGAGUUUUC   1820

2.5 PREDICTED: Glycine max basic leucine zipper 61 (LOC100101873), mRNA basic leucine zipper 61(LOC100101873) coding protein psRNATarget
NM_001250289.2
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  |=|||||=|||||||||||=|
targets:612   CUAAUCAGAAUUAGAGUUUUA   632

2.5 Glycine max uncharacterized LOC100306080 (LOC100306080), mRNA uncharacterized LOC100306080(LOC100306080) coding protein psRNATarget
BT090006.1
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  |=|||||=|||||||||||=|
targets:614   CUAAUCAGAAUUAGAGUUUUA   634

2.5 Soybean clone JCVI-FLGm-3K6 unknown mRNA NA coding protein psRNATarget
XM_003545760.3
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  |=|||||=|||||||||||=|
targets:802   CUAAUCAGAAUUAGAGUUUUA   822

2.5 PREDICTED: Glycine max B-box zinc finger protein 32-like (LOC100805832), mRNA B-box zinc finger protein 32-like(LOC100805832) coding protein psRNATarget
XM_014768543.1
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  |*|||=|||||||||||||=|
targets:2135   CAAAUUAAAAUUAGAGUUUUA   2155

2.5 PREDICTED: Glycine max protein DETOXIFICATION 49-like (LOC100787316), mRNA protein DETOXIFICATION 49-like(LOC100787316) coding protein psRNATarget
XM_014770913.1
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  =||||||*||||=||||||||
targets:1529   UCAAUCAUAAUUGGAGUUUCA   1549

2.5 PREDICTED: Glycine max mitochondrial import inner membrane translocase subunit TIM22-3-like (LOC100812694), mRNA mitochondrial import inner membrane translocase subunit TIM22-3-like(LOC100812694) coding protein psRNATarget
XM_003549910.3
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  **|||||=||||||=||||||
targets:27   GAAAUCAGAAUUAGGGUUUCA   47

2.5 PREDICTED: Glycine max 60S ribosomal protein L37a (LOC100785915), mRNA 60S ribosomal protein L37a(LOC100785915) coding protein psRNATarget
XM_003524211.3
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  **|||||=||||||=||||||
targets:59   GAAAUCAGAAUUAGGGUUUCA   79

2.5 PREDICTED: Glycine max 60S ribosomal protein L37a (LOC100305661), mRNA 60S ribosomal protein L37a(LOC100305661) coding protein psRNATarget
XM_006587042.2
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  =*|||||=|=|||||||||||
targets:2924   UGAAUCAGAGUUAGAGUUUCA   2944

2.5 PREDICTED: Glycine max subtilisin-like protease SBT2.5 (LOC100820468), mRNA subtilisin-like protease SBT2.5(LOC100820468) coding protein psRNATarget
XM_014778517.1
ncRNA:21   GGUUAGUUUUAAUCUCAAAGU   1
  **||||||||||||||*|||*
targets:762   GAAAUCAAAAUUAGAGGUUCU   782

2.5 PREDICTED: Glycine max uncharacterized LOC106799612 (LOC106799612), mRNA uncharacterized LOC106799612(LOC106799612) coding protein psRNATarget
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