Search result

BaseInfo

ncRNA ID	bra-miR172c-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA9:27738162-27738313 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	39 - GCAUCAUCAUCAAGAUUCAGA - 59
Stem-loop(if miRNA)	UUCAGACUUUGAA  AGUUGCAGUCAUUUUUUGCUAUUGCAUCAUCAUCAAGAUUCAGAAAUCAUAUUCCUUGAUGG              GC                                                              G              ||                                                              U              CG                                                              U -----UAUUUUUU  GUAAAUUAGCGGCGACGUCGUAGUAGUUCUAAGAGUUUGGUUUUUUCUGUCCGAGCUUCCUC
Stem-loop sequence	UUCAGACUUUGAAGCAGUUGCAGUCAUUUUUUGCUAUUGCAUCAUCAUCAAGAUUCAGAAAUCAUAUUCCUUGAUGGGUUCUCCUUCGAGCCUGUCUUUUUUGGUUUGAGAAUCUUGAUGAUGCUGCAGCGGCGAUUAAAUGGCUUUUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009117826.2	ncRNA:21   AGACUUA-GAACUACUACUACG   1   |=|||||-|||||||||||||| targets:2633   UUUGAAUGCUUGAUGAUGAUGC   2654 Target Full Sequence	2.0	PREDICTED: Brassica rapa gamma-tubulin complex component 4 (LOC103841300), mRNA	gamma-tubulin complex component 4(LOC103841300)	coding protein	psRNATarget
XM_009147124.2	ncRNA:21   AGACUUAGAACUACUACUACG   1   ***|||||||||||||||*|| targets:2061   GAAGAAUCUUGAUGAUGAAGC   2081 Target Full Sequence	2.5	PREDICTED: Brassica rapa sulfate transporter 1.3 (LOC103869074), mRNA	sulfate transporter 1.3(LOC103869074)	coding protein	psRNATarget
XM_009139210.2	ncRNA:21   AGACUUAGAACUACUACUACG   1   ***|||||*|||||||||||| targets:1255   AAAGAAUCCUGAUGAUGAUGC   1275 Target Full Sequence	2.5	PREDICTED: Brassica rapa rho GTPase-activating protein REN1-like (LOC103861494), mRNA	rho GTPase-activating protein REN1-like(LOC103861494)	coding protein	psRNATarget
XM_009128570.2	ncRNA:21   AGACUUAGAACUACUACUACG   1   |||||**|||||||||||||* targets:112   UCUGACGCUUGAUGAUGAUGA   132 Target Full Sequence	3.0	PREDICTED: Brassica rapa B3 domain-containing protein REM1 (LOC103851686), mRNA	B3 domain-containing protein REM1(LOC103851686)	coding protein	psRNATarget
XM_009106220.2	ncRNA:21   AGACUUAGAACUACUACUACG   1   *=||||*=||||||||||||* targets:693   CUUGAAGUUUGAUGAUGAUGA   713 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103830441 (LOC103830441), mRNA	uncharacterized LOC103830441(LOC103830441)	coding protein	psRNATarget
XM_018659314.1	ncRNA:21   AGACUUAGAACUACUACUACG   1   *=||=||*||||||||||||* targets:1705   CUUGGAUAUUGAUGAUGAUGA   1725 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC108872055 (LOC108872055), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018659313.1	ncRNA:21   AGACUUAGAACUACUACUACG   1   *=||=||*||||||||||||* targets:1705   CUUGGAUAUUGAUGAUGAUGA   1725 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC108872055 (LOC108872055), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).