Search result

BaseInfo

ncRNA ID novel_gma_miR1577
Species Glycine max
Class miRNA
Genome position Chr4:48869850-48870007 [-]
Reference genome Glycine_max_v2.0
Source SRR1294480
Length 24
Mature sequence(if miRNA) 1 - AAUAAGAAUGUGACACGUGACAGU - 24
Stem-loop(if miRNA) --                                     A                 AAUCUCAAAUCC  G       A
  UGUCACGUGUCACGUUCUUAUUGGAUGAUGAUUGUCA GUGUCAUGUUCUGAUUG            AG AACAAUG C
  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||            || ||||||| A
  ACAGUGCACAGUGUAAGAAUAACCUACUACUGACAGU CACAGUACAAGACUAAC            UU UUGUUAC U
UG                                     G                 ---CCUUUACUU  G       G
Stem-loop sequence UGUCACGUGUCACGUUCUUAUUGGAUGAUGAUUGUCAAGUGUCAUGUUCUGAUUGAAUCUCAAAUCCAGGAACAAUGACAUGCAUUGUUGUUUUCAUUUCCCAAUCAGAACAUGACACGUGACAGUCAUCAUCCAAUAAGAAUGUGACACGUGACAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI410445.1
ncRNA:24   UGACAGUGCACAGUGUAAGAAUAA   1
  |*|||=|=||||||||||||||||
targets:45   AGUGUUAUGUGUCACAUUCUUAUU   68

2.0 Sequence 8570 from Patent EP2074227 NA coding protein psRNATarget
JB170906.1
ncRNA:24   UGACAGUGCACAGUGUAAGAAUAA   1
  |*|||=|=||||||||||||||||
targets:45   AGUGUUAUGUGUCACAUUCUUAUU   68

2.0 Sequence 8570 from Patent EP2559767 NA coding protein psRNATarget
LQ242575.1
ncRNA:24   UGACAGUGCACAGUGUAAGAAUAA   1
  |*|||=|=||||||||||||||||
targets:45   AGUGUUAUGUGUCACAUUCUUAUU   68

2.0 Sequence 8570 from Patent EP2985353 NA coding protein psRNATarget