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BaseInfo

ncRNA ID	bra-miR9563b-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA9:27203625-27203862 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	22
Mature sequence(if miRNA)	186 - AAAUUAAGAGAUGAAUUCUUAC - 207
Stem-loop(if miRNA)	AAUGAAUAGGGACC     GAAUAUUAAUUUGAAGAAUGGUAUUAAGAACAUGAUUAAUGGGGAGUUCUUAAGGUGAGGUUCUUAACAGGAUAUAAGAACUCGUCUCUUAACUUUUAACUAAAAA               CAAAU                                                                                                          A               |||||               CCUUA                                                                                                          A --------------     AGAAUCCCAUCUCAAGAAUCACCCUACAUUCUUAAGUAGAGAAUUAAAAAUUGAUUUUUUCGAUUUUUGGCCGAGAAUUUAUGGAAUAAAUUCUCAACCAACAAUC
Stem-loop sequence	AAUGAAUAGGGACCCAAAUGAAUAUUAAUUUGAAGAAUGGUAUUAAGAACAUGAUUAAUGGGGAGUUCUUAAGGUGAGGUUCUUAACAGGAUAUAAGAACUCGUCUCUUAACUUUUAACUAAAAAAACUAACAACCAACUCUUAAAUAAGGUAUUUAAGAGCCGGUUUUUAGCUUUUUUAGUUAAAAAUUAAGAGAUGAAUUCUUACAUCCCACUAAGAACUCUACCCUAAGAAUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009129097.1	ncRNA:22   CAUUCUUAAGUAGAGAAUUAAA   1   **|||||*|||||||||||*|| targets:75   ACAAGAAGUCAUCUCUUAAGUU   96 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103852181 (LOC103852181), mRNA	uncharacterized LOC103852181(LOC103852181)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).