Search result

BaseInfo

ncRNA ID	novel_gma_miR1567
Species	Glycine max
Class	miRNA
Genome position	Chr10:38253780-38253846 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451647;SRR1451607
Length	24
Mature sequence(if miRNA)	44 - AGUAGAAAAGCUCUCAAAAGCACU - 67
Stem-loop(if miRNA)	--           A   C            AAC   UGCUUUUGAGA CUU UCUACUGGAAAA   U   ||||||||||| ||| ||||||||||||   C   ACGAAAACUCU GAA AGAUGAUCUUUU   U UC           C   A            AUA
Stem-loop sequence	UGCUUUUGAGAACUUCUCUACUGGAAAAAACUCUAUAUUUUCUAGUAGAAAAGCUCUCAAAAGCACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006578927.2	ncRNA:24   UCACGAAAACUCUCGAAAAGAUGA   1   ||||=|||||=||||||*|||||| targets:2164   AGUGUUUUUGGGAGCUUCUCUACU   2187 Target Full Sequence	2.5	PREDICTED: Glycine max auxin response factor 17-like (LOC102662128), mRNA	auxin response factor 17-like(LOC102662128)	coding protein	psRNATarget
XM_014774046.1	ncRNA:24   UCACGAAAACUCUCGAAAAGAUGA   1   ||**|||||||||||||*|||||* targets:600   AGCUCUUUUGAGAGCUUCUCUACC   623 Target Full Sequence	2.5	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X2, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774047.1	ncRNA:24   UCACGAAAACUCUCGAAAAGAUGA   1   ||**|||||||||||||*|||||* targets:779   AGCUCUUUUGAGAGCUUCUCUACC   802 Target Full Sequence	2.5	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X3, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774048.1	ncRNA:24   UCACGAAAACUCUCGAAAAGAUGA   1   ||**|||||||||||||*|||||* targets:798   AGCUCUUUUGAGAGCUUCUCUACC   821 Target Full Sequence	2.5	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X4, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774045.1	ncRNA:24   UCACGAAAACUCUCGAAAAGAUGA   1   ||**|||||||||||||*|||||* targets:876   AGCUCUUUUGAGAGCUUCUCUACC   899 Target Full Sequence	2.5	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X1, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
KF542816.1	ncRNA:24   UCACGAAAACUCUCGAAAAGAUGA   1   *|**|||||||*|||||||||||* targets:1331   CGGCCUUUUGAUAGCUUUUCUACC   1354 Target Full Sequence	2.5	Glycine max phospholipase D (PLDZ) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001288593.1	ncRNA:24   UCACGAAAACUCUCGAAAAGAUGA   1   *|**|||||||*|||||||||||* targets:1331   CGGCCUUUUGAUAGCUUUUCUACC   1354 Target Full Sequence	2.5	Glycine max phospholipase D p1-like (PLDZ), mRNA	phospholipase D p1-like(PLDZ)	coding protein	psRNATarget