Search result

BaseInfo

ncRNA ID	novel_gma_miR1566
Species	Glycine max
Class	miRNA
Genome position	Chr1:46360802-46360847 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451647;SRR1451619
Length	22
Mature sequence(if miRNA)	25 - CUUUCUAAGACGGUUUUUAGCU - 46
Stem-loop(if miRNA)	--                    U   UUAAAAACCGUCUUAGAAAG A   ||||||||||||||||||||   GAUUUUUGGCAGAAUCUUUC U UC                    A
Stem-loop sequence	UUAAAAACCGUCUUAGAAAGUAUACUUUCUAAGACGGUUUUUAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014763138.1	ncRNA:22   UCGAUUUUUGGCAGAAUCUUUC   1   |*|||||||||*|||||||||| targets:1589   AACUAAAAACCAUCUUAGAAAG   1610 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X3, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
XM_006589010.2	ncRNA:22   UCGAUUUUUGGCAGAAUCUUUC   1   |*|||||||||*|||||||||| targets:2298   AACUAAAAACCAUCUUAGAAAG   2319 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X2, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
XM_014767461.1	ncRNA:22   UCGAUUUUUGGCAGAAUCUUUC   1   ||-|||||||||||||||||*| targets:2610   AG-UAAAAACCGUCUUAGAAUG   2630 Target Full Sequence	1.5	PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA	putative dual specificity protein phosphatase DSP8(LOC100787468)	coding protein	psRNATarget
XM_014775518.1	ncRNA:22   UCGAUUU-UUGGCAGAAUCUUUC   1   **=|=||-||||||||||||||| targets:736   UAUUGAAUAACCGUCUUAGAAAG   758 Target Full Sequence	3.0	PREDICTED: Glycine max methylsterol monooxygenase 1-1-like (LOC100802435), mRNA	methylsterol monooxygenase 1-1-like(LOC100802435)	coding protein	psRNATarget
XM_006599236.2	ncRNA:22   UCGAUUUUUGGCAGAAUCUUUC   1   **=|*|=||||||||||||||* targets:399   CUUUUAGAACCGUCUUAGAAAA   420 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100788736 (LOC100788736), transcript variant X1, mRNA	uncharacterized LOC100788736(LOC100788736)	coding protein	psRNATarget