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BaseInfo

ncRNA ID	bra-miR9563b-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA9:27203625-27203862 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	24
Mature sequence(if miRNA)	95 - AAGAACUCGUCUCUUAACUUUUAA - 118
Stem-loop(if miRNA)	AAUGAAUAGGGACC     GAAUAUUAAUUUGAAGAAUGGUAUUAAGAACAUGAUUAAUGGGGAGUUCUUAAGGUGAGGUUCUUAACAGGAUAUAAGAACUCGUCUCUUAACUUUUAACUAAAAA               CAAAU                                                                                                          A               |||||               CCUUA                                                                                                          A --------------     AGAAUCCCAUCUCAAGAAUCACCCUACAUUCUUAAGUAGAGAAUUAAAAAUUGAUUUUUUCGAUUUUUGGCCGAGAAUUUAUGGAAUAAAUUCUCAACCAACAAUC
Stem-loop sequence	AAUGAAUAGGGACCCAAAUGAAUAUUAAUUUGAAGAAUGGUAUUAAGAACAUGAUUAAUGGGGAGUUCUUAAGGUGAGGUUCUUAACAGGAUAUAAGAACUCGUCUCUUAACUUUUAACUAAAAAAACUAACAACCAACUCUUAAAUAAGGUAUUUAAGAGCCGGUUUUUAGCUUUUUUAGUUAAAAAUUAAGAGAUGAAUUCUUACAUCCCACUAAGAACUCUACCCUAAGAAUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009130890.2	ncRNA:24   AAUUUUCAAUUCUCUGCUCAAGAA   1   *|*==|||||=||||*|||||||| targets:1093   AUCGGAGUUAGGAGAAGAGUUCUU   1116 Target Full Sequence	2.5	PREDICTED: Brassica rapa zinc-finger homeodomain protein 3 (LOC103853989), mRNA	zinc-finger homeodomain protein 3(LOC103853989)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).