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BaseInfo

ncRNA ID novel_gma_miR1562
Species Glycine max
Class miRNA
Genome position Chr8:46484281-46484355 [+]
Reference genome Glycine_max_v2.0
Source SRR1451646
Length 19
Mature sequence(if miRNA) 1 - AUUUGUUUGUGAUUGUAAU - 19
Stem-loop(if miRNA) --AUU   -     A UG       CA    --UA    G
     UGU UUGUG U  UAAUUUG  AUUU    ACUU A
     ||| ||||| |  |||||||  ||||    ||||
     ACG AACAC G  GUUAGAU  UAGA    UGAA A
GUUUU   U     - GU       -C    UUUA    A
Stem-loop sequence AUUUGUUUGUGAUUGUAAUUUGCAAUUUUAACUUGAAAAAGUAUUUAGAUCUAGAUUGUGGCACAAUGCAUUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT095315.1
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  |||||||||||||||||||
targets:163   AUUACAAUCACAAACAAAU   181

0.0 Soybean clone JCVI-FLGm-7K21 unknown mRNA NA coding protein psRNATarget
XM_006599082.2
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|||||||||||||||
targets:2367   CUUGCAAUCACAAACAAAU   2385

2.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X3, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_014769002.1
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|||||||||||||||
targets:2528   CUUGCAAUCACAAACAAAU   2546

2.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X10, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_006599085.2
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|||||||||||||||
targets:2534   CUUGCAAUCACAAACAAAU   2552

2.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X8, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_014769000.1
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|||||||||||||||
targets:2560   CUUGCAAUCACAAACAAAU   2578

2.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X7, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_014768999.1
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|||||||||||||||
targets:2566   CUUGCAAUCACAAACAAAU   2584

2.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X6, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_014769001.1
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|||||||||||||||
targets:2581   CUUGCAAUCACAAACAAAU   2599

2.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X9, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_006599084.2
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|||||||||||||||
targets:2613   CUUGCAAUCACAAACAAAU   2631

2.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X5, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_003547721.3
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|||||||||||||||
targets:2737   CUUGCAAUCACAAACAAAU   2755

2.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X1, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_006599083.2
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|||||||||||||||
targets:2778   CUUGCAAUCACAAACAAAU   2796

2.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X4, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_006599081.2
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|||||||||||||||
targets:2810   CUUGCAAUCACAAACAAAU   2828

2.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X2, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_003519048.3
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  =||||||*|||||||||||
targets:334   GUUACAAGCACAAACAAAU   352

2.5 PREDICTED: Glycine max U4/U6 small nuclear ribonucleoprotein PRP4-like protein (LOC100800927), transcript variant X1, mRNA U4/U6 small nuclear ribonucleoprotein PRP4-like protein(LOC100800927) coding protein psRNATarget
XM_006575204.2
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  =||||||*|||||||||||
targets:334   GUUACAAGCACAAACAAAU   352

2.5 PREDICTED: Glycine max U4/U6 small nuclear ribonucleoprotein PRP4-like protein (LOC100800927), transcript variant X2, mRNA U4/U6 small nuclear ribonucleoprotein PRP4-like protein(LOC100800927) coding protein psRNATarget
XM_006594148.2
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  |||||**||||||||||||
targets:103   AUUACUUUCACAAACAAAU   121

2.5 PREDICTED: Glycine max protein LITTLE ZIPPER 4-like (LOC100789735), transcript variant X2, mRNA protein LITTLE ZIPPER 4-like(LOC100789735) coding protein psRNATarget
XM_003520946.3
ncRNA:19   UAAUGUUAGUGUUUGUUUA   1
  *||=|*|||||||||||||
targets:2779   CUUGCUAUCACAAACAAAU   2797

3.0 PREDICTED: Glycine max uncharacterized LOC100797051 (LOC100797051), mRNA uncharacterized LOC100797051(LOC100797051) coding protein psRNATarget
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