Search result

BaseInfo

ncRNA ID novel_gma_miR1557
Species Glycine max
Class miRNA
Genome position Chr7:17373861-17373975 [+]
Reference genome Glycine_max_v2.0
Source SRR1451646
Length 24
Mature sequence(if miRNA) 92 - CAAGAAAUAAAAACACUGAAAAUU - 115
Stem-loop(if miRNA) --     --           UC      --------A    -  CAUUUUUAAAAUAUUAGAA
  UUUUC  UGUUUUUAUUU  UGAAAA         UAUU UU                   U
  |||||  |||||||||||  ||||||         |||| ||
  AAAAG  ACAAAAAUAAA  ACUUUU         UCUU AG                   U
UU     UC           GA      GUCUUUUGU    C  UUUUGUUUGUACAAAAAUC
Stem-loop sequence UUUUCUGUUUUUAUUUUCUGAAAAAUAUUUUCAUUUUUAAAAUAUUAGAAUUCUAAAAACAUGUUUGUUUUGACUUCUUGUUUUCUGUUUUCAAGAAAUAAAAACACUGAAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT097850.1
ncRNA:24   UUAAAAGUCACAAAAAUAAAGAAC   1
  **||||*|||||||||*|||||||
targets:573   CCUUUUGAGUGUUUUUUUUUCUUG   596

2.5 Soybean clone JCVI-FLGm-22N1 unknown mRNA NA coding protein psRNATarget
XM_003548285.3
ncRNA:24   UUAAAAGUCACAAAAAUAAAGAAC   1
  |||*||=|||*||||||||||||*
targets:65   AAUCUUUAGUUUUUUUAUUUCUUC   88

3.0 PREDICTED: Glycine max acid phosphatase 1-like (LOC100790842), transcript variant X1, mRNA acid phosphatase 1-like(LOC100790842) coding protein psRNATarget
XM_014768531.1
ncRNA:24   UUAAAAGUCACAAAAAUAAAGAAC   1
  |||*||=|||*||||||||||||*
targets:51   AAUCUUUAGUUUUUUUAUUUCUUC   74

3.0 PREDICTED: Glycine max acid phosphatase 1-like (LOC100790842), transcript variant X3, mRNA acid phosphatase 1-like(LOC100790842) coding protein psRNATarget