ncRNA ID | novel_gma_miR1557 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr7:17373861-17373975 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451646 |
Length | 24 |
Mature sequence(if miRNA) | 92 - CAAGAAAUAAAAACACUGAAAAUU - 115 |
Stem-loop(if miRNA) |
--     --           UC      --------A    -  CAUUUUUAAAAUAUUAGAA   UUUUC  UGUUUUUAUUU  UGAAAA         UAUU UU                   U   |||||  |||||||||||  ||||||         |||| ||   AAAAG  ACAAAAAUAAA  ACUUUU         UCUU AG                   U UU     UC           GA      GUCUUUUGU    C  UUUUGUUUGUACAAAAAUC |
Stem-loop sequence | UUUUCUGUUUUUAUUUUCUGAAAAAUAUUUUCAUUUUUAAAAUAUUAGAAUUCUAAAAACAUGUUUGUUUUGACUUCUUGUUUUCUGUUUUCAAGAAAUAAAAACACUGAAAAUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT097850.1 |
|
2.5 | Soybean clone JCVI-FLGm-22N1 unknown mRNA | NA | coding protein | psRNATarget | |||||||||
XM_003548285.3 |
|
3.0 | PREDICTED: Glycine max acid phosphatase 1-like (LOC100790842), transcript variant X1, mRNA | acid phosphatase 1-like(LOC100790842) | coding protein | psRNATarget | |||||||||
XM_014768531.1 |
|
3.0 | PREDICTED: Glycine max acid phosphatase 1-like (LOC100790842), transcript variant X3, mRNA | acid phosphatase 1-like(LOC100790842) | coding protein | psRNATarget |