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BaseInfo

ncRNA ID bra-miR400-3p
Species Brassica rapa
Class miRNA
Genome position chrA9:20034113-20034253 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 30 - GACUUAUAAUGAUCUCAUGAA - 50
Stem-loop(if miRNA) AUC           AG    U        U         G              G A     UAAUC   U
   UUUUCUUGAGA  UUGC GAAGAUUG UUUAUGAGA UAUUAUAAGUCACU C UUUGG     AAG G
   |||||||||||  |||| |||||||| ||||||||| |||||||||||||| | |||||     ||| U
   GAGAGAAUUCU  AACG UUUUUAGC AAGUACUCU GUAAUAUUCAGUGA G AAACC     UUC U
AAU           GA    -        U         A              A C     ---CU   G
Stem-loop sequence AUCUUUUCUUGAGAAGUUGCUGAAGAUUGUUUUAUGAGAGUAUUAUAAGUCACUGCAUUUGGUAAUCAAGUGUUGCUUUCCCAAACGAAGUGACUUAUAAUGAUCUCAUGAAUCGAUUUUUGCAAAGUCUUAAGAGAGUAA

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).