ncRNA ID | bra-miR400-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA9:20034113-20034253 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 30 - GACUUAUAAUGAUCUCAUGAA - 50 |
Stem-loop(if miRNA) |
AUC           AG    U        U         G              G A     UAAUC   U    UUUUCUUGAGA  UUGC GAAGAUUG UUUAUGAGA UAUUAUAAGUCACU C UUUGG     AAG G    |||||||||||  |||| |||||||| ||||||||| |||||||||||||| | |||||     ||| U    GAGAGAAUUCU  AACG UUUUUAGC AAGUACUCU GUAAUAUUCAGUGA G AAACC     UUC U AAU           GA    -        U         A              A C     ---CU   G |
Stem-loop sequence | AUCUUUUCUUGAGAAGUUGCUGAAGAUUGUUUUAUGAGAGUAUUAUAAGUCACUGCAUUUGGUAAUCAAGUGUUGCUUUCCCAAACGAAGUGACUUAUAAUGAUCUCAUGAAUCGAUUUUUGCAAAGUCUUAAGAGAGUAA |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |