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BaseInfo

ncRNA ID novel_gma_miR1552
Species Glycine max
Class miRNA
Genome position Chr6:18005540-18005695 [-]
Reference genome Glycine_max_v2.0
Source SRR1451646
Length 24
Mature sequence(if miRNA) 133 - UGUUAAGUGAUGACGUGGUAGACA - 156
Stem-loop(if miRNA) --U        A       GU         A           CA   U     AU    C   U  A  C     CAC
   GUUAAGUG UGACGUG  AGACAUAGU UUACGUUAUCA  UCU GUCAC  AUAC UCA UG CA AUCAU   U
   |||||||| |||||||  ||||||||| |||||||||||  ||| |||||  |||| ||| || || |||||
   CAAUUCAC ACUGUAC  UUUGUGUCA AGUGCGGUAGU  AGG UAGUG  UGUG AGU AU GU UAGUA   U
AGG        A       UG         C           AC   U     GC    C   C  G  A     ACU
Stem-loop sequence UGUUAAGUGAUGACGUGGUAGACAUAGUAUUACGUUAUCACAUCUUGUCACAUAUACCUCAUUGACACAUCAUCACUUUCAAUGAUAUGGUACUGACGUGUCGGUGAUUGGACAUGAUGGCGUGACACUGUGUUUGUCAUGUCAACACUUAACGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014766262.1
ncRNA:24   ACAGAUGGUGCAGUAGUGAAUUGU   1
  |||=||=|||||||||||||||||
targets:762   UGUUUAUCACGUCAUCACUUAACA   785

1.0 PREDICTED: Glycine max uncharacterized LOC100804377 (LOC100804377), mRNA uncharacterized LOC100804377(LOC100804377) coding protein psRNATarget