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BaseInfo

ncRNA ID novel_gma_miR1546
Species Glycine max
Class miRNA
Genome position Chr4:5501767-5501849 [-]
Reference genome Glycine_max_v2.0
Source SRR1451646
Length 22
Mature sequence(if miRNA) 62 - CUCUUCAUCCUUACCAUUCAUU - 83
Stem-loop(if miRNA) --        C                              
  CUCUUCAU CUUACCAUUCAUUUUAUUGAGAUCUAAUGGU
  |||||||| ||||||||||||||||||||||||||||||A
  GAGGAGUA GAGUGGUAAGUAAAAUAACUCUAGAUUACCA
AU        U                              
Stem-loop sequence CUCUUCAUCCUUACCAUUCAUUUUAUUGAGAUCUAAUGGUAACCAUUAGAUCUCAAUAAAAUGAAUGGUGAGUAUGAGGAGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT095378.1
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  *=||*||*||||||||||||||
targets:303   UGUGCAUAGUAAGGAUGAAGAG   324

2.0 Soybean clone JCVI-FLGm-7C10 unknown mRNA NA coding protein psRNATarget
XM_006575202.2
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  |=||||*|||||||=|||||||
targets:380   AGUGAAGGGUAAGGGUGAAGAG   401

2.5 PREDICTED: Glycine max prolycopene isomerase, chloroplastic-like (LOC100798275), transcript variant X4, mRNA prolycopene isomerase, chloroplastic-like(LOC100798275) coding protein psRNATarget
XM_014768255.1
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  |=||||*|||||||=|||||||
targets:379   AGUGAAGGGUAAGGGUGAAGAG   400

2.5 PREDICTED: Glycine max prolycopene isomerase, chloroplastic-like (LOC100798275), transcript variant X3, mRNA prolycopene isomerase, chloroplastic-like(LOC100798275) coding protein psRNATarget
XM_014768246.1
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  |=||||*|||||||=|||||||
targets:379   AGUGAAGGGUAAGGGUGAAGAG   400

2.5 PREDICTED: Glycine max prolycopene isomerase, chloroplastic-like (LOC100798275), transcript variant X2, mRNA prolycopene isomerase, chloroplastic-like(LOC100798275) coding protein psRNATarget
XM_003519043.3
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  |=||||*|||||||=|||||||
targets:378   AGUGAAGGGUAAGGGUGAAGAG   399

2.5 PREDICTED: Glycine max prolycopene isomerase, chloroplastic-like (LOC100798275), transcript variant X1, mRNA prolycopene isomerase, chloroplastic-like(LOC100798275) coding protein psRNATarget
XM_003526945.3
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  *|||||||*|||||||||=|||
targets:1502   CAUGAAUGAUAAGGAUGAGGAG   1523

2.5 PREDICTED: Glycine max elongation factor Tu, chloroplastic (LOC100793431), mRNA elongation factor Tu, chloroplastic(LOC100793431) coding protein psRNATarget
AK285640.1
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  *|||||||**||||||||||||
targets:1263   UAUGAAUGACAAGGAUGAAGAG   1284

2.5 Glycine max cDNA, clone: GMFL01-14-B08 NA coding protein psRNATarget
XM_003525540.3
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  *|||||||**||||||||||||
targets:1399   UAUGAAUGACAAGGAUGAAGAG   1420

2.5 PREDICTED: Glycine max elongation factor Tu, chloroplastic (LOC100791320), mRNA elongation factor Tu, chloroplastic(LOC100791320) coding protein psRNATarget
XM_003539185.3
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  ||-|||||||||*||||||||*
targets:1088   AA-GAAUGGUAAUGAUGAAGAA   1108

2.5 PREDICTED: Glycine max U-box domain-containing protein 44-like (LOC100791453), transcript variant X3, mRNA U-box domain-containing protein 44-like(LOC100791453) coding protein psRNATarget
XM_006591099.2
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  ||-|||||||||*||||||||*
targets:1170   AA-GAAUGGUAAUGAUGAAGAA   1190

2.5 PREDICTED: Glycine max U-box domain-containing protein 44-like (LOC100791453), transcript variant X1, mRNA U-box domain-containing protein 44-like(LOC100791453) coding protein psRNATarget
XM_014764057.1
ncRNA:22   UUACUUACCAUUCCUACUUCUC   1
  ||-|||||||||*||||||||*
targets:1182   AA-GAAUGGUAAUGAUGAAGAA   1202

2.5 PREDICTED: Glycine max U-box domain-containing protein 44-like (LOC100791453), transcript variant X2, mRNA U-box domain-containing protein 44-like(LOC100791453) coding protein psRNATarget
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