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BaseInfo

ncRNA ID	bra-miR400-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA9:20034113-20034253 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	89 - UAUGAGAGUAUUAUAAGUCAC - 109
Stem-loop(if miRNA)	AUC           AG    U        U         G              G A     UAAUC   U    UUUUCUUGAGA  UUGC GAAGAUUG UUUAUGAGA UAUUAUAAGUCACU C UUUGG     AAG G    |||||||||||  |||| |||||||| ||||||||| |||||||||||||| | |||||     ||| U    GAGAGAAUUCU  AACG UUUUUAGC AAGUACUCU GUAAUAUUCAGUGA G AAACC     UUC U AAU           GA    -        U         A              A C     ---CU   G
Stem-loop sequence	AUCUUUUCUUGAGAAGUUGCUGAAGAUUGUUUUAUGAGAGUAUUAUAAGUCACUGCAUUUGGUAAUCAAGUGUUGCUUUCCCAAACGAAGUGACUUAUAAUGAUCUCAUGAAUCGAUUUUUGCAAAGUCUUAAGAGAGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009120284.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||||||||||||||||||||* targets:1075   GUGACUUAUAAUACUCUCAUU   1095 Target Full Sequence	1.0	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g06580 (LOC103843546), mRNA	pentatricopeptide repeat-containing protein At1g06580(LOC103843546)	coding protein	psRNATarget
XM_009114595.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   |||||*||||||||||||||| targets:1332   GUGACGUAUAAUACUCUCAUA   1352 Target Full Sequence	1.0	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g64580 (LOC103838174), mRNA	pentatricopeptide repeat-containing protein At1g64580(LOC103838174)	coding protein	psRNATarget
XM_018654217.1	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||*|||||||||||||||||| targets:1074   GUUACUUAUAAUACUCUCAUA   1094 Target Full Sequence	1.0	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g62910-like (LOC103838255), mRNA	NA	coding protein	psRNATarget
XM_009116319.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||||||||||*|||||||||| targets:1105   GUGACUUAUACUACUCUCAUA   1125 Target Full Sequence	1.5	PREDICTED: Brassica rapa putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial (LOC103839829), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial(LOC103839829)	coding protein	psRNATarget
XM_009116324.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||||||||||*|||||||||| targets:1105   GUGACUUAUACUACUCUCAUA   1125 Target Full Sequence	1.5	PREDICTED: Brassica rapa putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial (LOC103839829), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial(LOC103839829)	coding protein	psRNATarget
XM_009116339.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||||||||||*|||||||||| targets:1105   GUGACUUAUACUACUCUCAUA   1125 Target Full Sequence	1.5	PREDICTED: Brassica rapa putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial (LOC103839829), transcript variant X4, mRNA	putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial(LOC103839829)	coding protein	psRNATarget
XM_009114453.1	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   |||||||||||*||||||||| targets:1012   GUGACUUAUAACACUCUCAUA   1032 Target Full Sequence	1.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g62720 (LOC103838041), mRNA	pentatricopeptide repeat-containing protein At1g62720(LOC103838041)	coding protein	psRNATarget
XM_009116331.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||||||||||*|||||||||| targets:1105   GUGACUUAUACUACUCUCAUA   1125 Target Full Sequence	1.5	PREDICTED: Brassica rapa putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial (LOC103839829), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial(LOC103839829)	coding protein	psRNATarget
XM_009116347.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||||||||||*|||||||||| targets:1105   GUGACUUAUACUACUCUCAUA   1125 Target Full Sequence	1.5	PREDICTED: Brassica rapa putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial (LOC103839829), transcript variant X5, mRNA	putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial(LOC103839829)	coding protein	psRNATarget
XM_009114814.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||||*|||||||||||||||* targets:1534   GUGAGUUAUAAUACUCUCAUU   1554 Target Full Sequence	2.0	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g62680, mitochondrial (LOC103838376), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At1g62680, mitochondrial(LOC103838376)	coding protein	psRNATarget
XM_009114811.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||||*|||||||||||||||* targets:1534   GUGAGUUAUAAUACUCUCAUU   1554 Target Full Sequence	2.0	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g62680, mitochondrial (LOC103838376), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g62680, mitochondrial(LOC103838376)	coding protein	psRNATarget
XM_009114812.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||||*|||||||||||||||* targets:1534   GUGAGUUAUAAUACUCUCAUU   1554 Target Full Sequence	2.0	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g62680, mitochondrial (LOC103838376), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g62680, mitochondrial(LOC103838376)	coding protein	psRNATarget
XM_018654315.1	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   ||||||||||*|||||||||* targets:706   GUGACUUAUACUACUCUCAUU   726 Target Full Sequence	2.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g62590 (LOC103838334), mRNA	NA	coding protein	psRNATarget
XM_009152760.2	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   *|*|||||*|||||||||||| targets:1248   UUCACUUACAAUACUCUCAUA   1268 Target Full Sequence	2.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At5g24830 (LOC103874348), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At5g24830(LOC103874348)	coding protein	psRNATarget
XM_009152761.1	ncRNA:21   CACUGAAUAUUAUGAGAGUAU   1   *|*|||||*|||||||||||| targets:1003   UUCACUUACAAUACUCUCAUA   1023 Target Full Sequence	2.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At5g24830 (LOC103874348), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At5g24830(LOC103874348)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).