Search result

BaseInfo

ncRNA ID	novel_gma_miR1544
Species	Glycine max
Class	miRNA
Genome position	Chr3:28970478-28970598 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451646
Length	22
Mature sequence(if miRNA)	1 - AAGAGGGGAAAUGUCAUGAGUU - 22
Stem-loop(if miRNA)	--    C   -    UU    -    -     CAUC       G  C           UC  C   CUUA GAC UUUU  CUUU CCCU CCUCU    AAUCAUU AA CAACCUUGUAA  CC U   |||| ||| ||||  |||| |||| |||||    ||||||| || |||||||||||  ||   GAGU CUG AAAG  GAGA GGGA GGGGG    UUGGUAG UU GUUGGAAUAUU  GG A UU    A   U    GG    A    A     --AA       G  A           GA  G
Stem-loop sequence	CUUACGACUUUUUUCUUUCCCUCCUCUCAUCAAUCAUUGAACCAACCUUGUAAUCCCCUAGGGAGUUAUAAGGUUGAUUGGAUGGUUAAGGGGGAAGGGAAGAGGGGAAAUGUCAUGAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006594603.2	ncRNA:22   UUGAGUACUGUAAAGGGGAGAA   1   ==||||||||||*||||||||* targets:2322   GGCUCAUGACAUAUCCCCUCUC   2343 Target Full Sequence	2.5	PREDICTED: Glycine max KH domain-containing protein At4g18375-like (LOC100816819), transcript variant X2, mRNA	KH domain-containing protein At4g18375-like(LOC100816819)	coding protein	psRNATarget
XM_006594602.2	ncRNA:22   UUGAGUACUGUAAAGGGGAGAA   1   ==||||||||||*||||||||* targets:2325   GGCUCAUGACAUAUCCCCUCUC   2346 Target Full Sequence	2.5	PREDICTED: Glycine max KH domain-containing protein At4g18375-like (LOC100816819), transcript variant X1, mRNA	KH domain-containing protein At4g18375-like(LOC100816819)	coding protein	psRNATarget
XM_014761978.1	ncRNA:22   UUGAGUACUGUAAAGGGGAGAA   1   ||=*||||||*||||||||||| targets:54   AAUCCAUGACCUUUCCCCUCUU   75 Target Full Sequence	2.5	PREDICTED: Glycine max protein LAZ1 homolog 2-like (LOC100775216), transcript variant X1, mRNA	protein LAZ1 homolog 2-like(LOC100775216)	coding protein	psRNATarget
XM_006586988.2	ncRNA:22   UUGAGUACUGUAAAGGGGAGAA   1   ||=*||||||*||||||||||| targets:345   AAUCCAUGACCUUUCCCCUCUU   366 Target Full Sequence	2.5	PREDICTED: Glycine max protein LAZ1 homolog 2-like (LOC100775216), transcript variant X4, mRNA	protein LAZ1 homolog 2-like(LOC100775216)	coding protein	psRNATarget
XM_006586989.2	ncRNA:22   UUGAGUACUGUAAAGGGGAGAA   1   ||=*||||||*||||||||||| targets:345   AAUCCAUGACCUUUCCCCUCUU   366 Target Full Sequence	2.5	PREDICTED: Glycine max protein LAZ1 homolog 2-like (LOC100775216), transcript variant X5, mRNA	protein LAZ1 homolog 2-like(LOC100775216)	coding protein	psRNATarget