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BaseInfo

ncRNA ID novel_gma_miR1543
Species Glycine max
Class miRNA
Genome position Chr3:13802987-13803132 [+]
Reference genome Glycine_max_v2.0
Source SRR1451646;SRR1451617;SRR1451622
Length 24
Mature sequence(if miRNA) 123 - UUUUUAAGACGGUUUUUAUGGAAC - 146
Stem-loop(if miRNA) --   UUG                  UU   C         AA      ---A   U    C          AAG
  UCU   AAAAAUCGUCUUAGAAAG  UAC CUUCUAAGA  GUUUUU    GUU AAAA CAUCUUAGAA   U
  |||   ||||||||||||||||||  ||| |||||||||  ||||||    ||| |||| ||||||||||
  AGG   UUUUUGGCAGAAUUUUUU  AUG GAAGAUUUU  UAAAAA    UAA UUUU GUAGAAUCUU   A
CA   -UA                  CU   A         AC      AAAG   U    A          ACU
Stem-loop sequence UCUUUGAAAAAUCGUCUUAGAAAGUUUACCCUUCUAAGAAAGUUUUUAGUUUAAAACCAUCUUAGAAAAGUAUCAUUCUAAGAUGAUUUUUAAUGAAAAAAAAUCAUUUUAGAAGAGUAUCUUUUUUAAGACGGUUUUUAUGGAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014773077.1
ncRNA:24   CAAGGUAUUUUUGGCAGAAUUUUU   1
  |||==|||||||||*||||||||*
targets:17   GUUUUAUAAAAACCAUCUUAAAAU   40

2.5 PREDICTED: Glycine max uncharacterized protein C26H5.07c-like (LOC102666872), mRNA uncharacterized protein C26H5.07c-like(LOC102666872) coding protein psRNATarget