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BaseInfo

ncRNA ID novel_gma_miR1537
Species Glycine max
Class miRNA
Genome position Chr20:40603589-40603631 [+]
Reference genome Glycine_max_v2.0
Source SRR1451646
Length 20
Mature sequence(if miRNA) 1 - UGUUAAUUGGAUGGAAAUGC - 20
Stem-loop(if miRNA) --  U               G
  UG UAAUUGGAUGGAAAU C
  || ||||||||||||||| U
  AC AUUGGCUUAUCUUUA G
AU  C               G
Stem-loop sequence UGUUAAUUGGAUGGAAAUGCUGGAUUUCUAUUCGGUUACCAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014761904.1
ncRNA:20   CGUAAAGGUAGGUUAAUUGU   1
  **|||||*||||||||||||
targets:414   CGAUUUCGAUCCAAUUAACA   433

2.5 PREDICTED: Glycine max kinesin-13A-like (LOC100800014), transcript variant X2, mRNA kinesin-13A-like(LOC100800014) coding protein psRNATarget
XM_006586864.2
ncRNA:20   CGUAAAGGUAGGUUAAUUGU   1
  **|||||*||||||||||||
targets:414   CGAUUUCGAUCCAAUUAACA   433

2.5 PREDICTED: Glycine max kinesin-13A-like (LOC100800014), transcript variant X3, mRNA kinesin-13A-like(LOC100800014) coding protein psRNATarget
XM_006586863.1
ncRNA:20   CGUAAAGGUAGGUUAAUUGU   1
  **|||||*||||||||||||
targets:717   CGAUUUCGAUCCAAUUAACA   736

2.5 PREDICTED: Glycine max kinesin-13A-like (LOC100800014), transcript variant X1, mRNA kinesin-13A-like(LOC100800014) coding protein psRNATarget
AK287056.1
ncRNA:20   CGUAAAGGUAGGUUAAUUGU   1
  **|||||*||||||||||||
targets:646   CGAUUUCGAUCCAAUUAACA   665

2.5 Glycine max cDNA, clone: GMFL01-43-B02 NA coding protein psRNATarget
XM_003546311.3
ncRNA:20   CGUAAAGGUAGGUUAAUUGU   1
  **|||||*||||||||||||
targets:727   CGAUUUCGAUCCAAUUAACA   746

2.5 PREDICTED: Glycine max kinesin-13A (LOC100819897), mRNA kinesin-13A(LOC100819897) coding protein psRNATarget
XM_006583062.2
ncRNA:20   CGUAAAGGUAGGUUAAUUGU   1
  *|||*||||||||||||*||
targets:806   UCAUCUCCAUCCAAUUAUCA   825

2.5 PREDICTED: Glycine max EPIDERMAL PATTERNING FACTOR-like protein 8 (LOC102664177), mRNA EPIDERMAL PATTERNING FACTOR-like protein 8(LOC102664177) coding protein psRNATarget