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BaseInfo

ncRNA ID	bra-miR9565-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA9:3447485-3447628 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	44 - CUGAAGCUAGUGAAAGAGAGA - 64
Stem-loop(if miRNA)	---     ---   CAUAUCUCUCGUUCUCUCGUUUCAGCUAAUGUGUAUUGUUUCAUCAGUUAAUGGUUGAAA    CCACA   UCC                                                            C    |||||   |||    CUUGU   UGU                                                            U UUG     UUU   UAUGCACGUAUAAGAUGGUGGUAGGGUGCAGAGAGAAAGUGAUCGAAGUCGAACAUUUGU
Stem-loop sequence	CCACAUCCCAUAUCUCUCGUUCUCUCGUUUCAGCUAAUGUGUAUUGUUUCAUCAGUUAAUGGUUGAAACUUGUUUACAAGCUGAAGCUAGUGAAAGAGAGACGUGGGAUGGUGGUAGAAUAUGCACGUAUUGUUUUUGUUCGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009115782.2	ncRNA:21   AGAGAGAAAGUGAUCGAAGUC   1   *||=||||||||||*|||||| targets:1837   GCUUUCUUUCACUACCUUCAG   1857 Target Full Sequence	2.5	PREDICTED: Brassica rapa probable receptor-like protein kinase At3g17420 (LOC103839272), transcript variant X1, mRNA	probable receptor-like protein kinase At3g17420(LOC103839272)	coding protein	psRNATarget
XM_009115796.2	ncRNA:21   AGAGAGAAAGUGAUCGAAGUC   1   *||=||||||||||*|||||| targets:1829   GCUUUCUUUCACUACCUUCAG   1849 Target Full Sequence	2.5	PREDICTED: Brassica rapa probable receptor-like protein kinase At3g17420 (LOC103839272), transcript variant X3, mRNA	probable receptor-like protein kinase At3g17420(LOC103839272)	coding protein	psRNATarget
XM_009115790.2	ncRNA:21   AGAGAGAAAGUGAUCGAAGUC   1   *||=||||||||||*|||||| targets:1827   GCUUUCUUUCACUACCUUCAG   1847 Target Full Sequence	2.5	PREDICTED: Brassica rapa probable receptor-like protein kinase At3g17420 (LOC103839272), transcript variant X2, mRNA	probable receptor-like protein kinase At3g17420(LOC103839272)	coding protein	psRNATarget
XM_009111247.2	ncRNA:21   AGAGAGAAAGUGAUCGAAGUC   1   |*|||||||||||*||||||* targets:627   UGUCUCUUUCACUUGCUUCAC   647 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103835140 (LOC103835140), transcript variant X1, mRNA	uncharacterized LOC103835140(LOC103835140)	coding protein	psRNATarget
XM_009111246.2	ncRNA:21   AGAGAGAAAGUGAUCGAAGUC   1   |*|||||||||||*||||||* targets:624   UGUCUCUUUCACUUGCUUCAC   644 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103835140 (LOC103835140), transcript variant X2, mRNA	uncharacterized LOC103835140(LOC103835140)	coding protein	psRNATarget
XM_018659822.1	ncRNA:21   AGAGAGAAAGUGAUCGAAGUC   1   |*|||||||||||*||||||* targets:457   UGUCUCUUUCACUUGCUUCAC   477 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC108872347 (LOC108872347), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018659823.1	ncRNA:21   AGAGAGAAAGUGAUCGAAGUC   1   |*|||||||||||*||||||* targets:370   UGUCUCUUUCACUUGCUUCAC   390 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC108872347 (LOC108872347), transcript variant X2, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).