Search result

BaseInfo

ncRNA ID	novel_gma_miR1522
Species	Glycine max
Class	miRNA
Genome position	Chr18:46817202-46817396 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451646
Length	23
Mature sequence(if miRNA)	1 - UUAGAGGUUGCACUAGAAUGAUC - 23
Stem-loop(if miRNA)	--UUA     UG        U    C C      G       C      G     C  G            C     A          -               GAGGU  CACUAGAA GAUC G ACCAAU UGUGCUU UUCCUC UCUAC AG UCAAUAUCUUUU UUUCA CUUUUGUUUU GUAAAUUACA      |||||  |||||||| |||| | |||||| ||||||| |||||| ||||| || |||||||||||| ||||| |||||||||| |||||||||G      CUCCA  GUGAUCUU UUAG C UGGUUA GCACGGA AAGGAG AGAUG UC AGUUAUAGAAAG AAAGU GGAAACGAAA CAUUUGAUGU AUAAC     GA        C    U A      G       C      G     A  G            C     -          A
Stem-loop sequence	UUAGAGGUUGCACUAGAAUGAUCCGCACCAAUGUGUGCUUCUUCCUCGUCUACCAGGUCAAUAUCUUUUCUUUCAACUUUUGUUUUGUAAAUUACAGUGUAGUUUACAAAAGCAAAGGUGAAACGAAAGAUAUUGAGCUAGUAGAGGAGGAACAGGCACGGAUUGGUACUGAUUCUUCUAGUGAGACCUCCAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006586135.2	ncRNA:23   CUAGUAAGAUCACGUUGGAGAUU   1   |||==|||||||||||||||||| targets:841   GAUUGUUCUAGUGCAACCUCUAA   863 Target Full Sequence	1.0	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_014779469.1	ncRNA:23   CUAGUAAGAUCACGUUGGAGAUU   1   |||==|||||||||||||||||| targets:841   GAUUGUUCUAGUGCAACCUCUAA   863 Target Full Sequence	1.0	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_006591670.1	ncRNA:23   CUAGUAAGAUCACGUUGGAGAUU   1   *||==|||||||||||||||||| targets:97   AAUUGUUCUAGUGCAACCUCUAA   119 Target Full Sequence	1.0	PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA	glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828)	coding protein	psRNATarget
XM_014764387.1	ncRNA:23   CUAGUAAGAUCACGUUGGAGAUU   1   ||*==|*|||||||||||||||= targets:686   GACUGUGCUAGUGCAACCUCUAG   708 Target Full Sequence	3.0	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 4-like (LOC100812737), mRNA	SNF2 domain-containing protein CLASSY 4-like(LOC100812737)	coding protein	psRNATarget