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BaseInfo

ncRNA ID	bra-miR9565-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA9:3447485-3447628 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	110 - UCUCGUUCUCUCGUUUCAGCU - 130
Stem-loop(if miRNA)	---     ---   CAUAUCUCUCGUUCUCUCGUUUCAGCUAAUGUGUAUUGUUUCAUCAGUUAAUGGUUGAAA    CCACA   UCC                                                            C    |||||   |||    CUUGU   UGU                                                            U UUG     UUU   UAUGCACGUAUAAGAUGGUGGUAGGGUGCAGAGAGAAAGUGAUCGAAGUCGAACAUUUGU
Stem-loop sequence	CCACAUCCCAUAUCUCUCGUUCUCUCGUUUCAGCUAAUGUGUAUUGUUUCAUCAGUUAAUGGUUGAAACUUGUUUACAAGCUGAAGCUAGUGAAAGAGAGACGUGGGAUGGUGGUAGAAUAUGCACGUAUUGUUUUUGUUCGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009152717.2	ncRNA:21   UCG-ACUUUGCUCUCUUGCUCU   1   |||-|||||||||||||||||= targets:1409   AGCCUGAAACGAGAGAACGAGG   1430 Target Full Sequence	3.0	PREDICTED: Brassica rapa metal-nicotianamine transporter YSL2 (LOC103874307), mRNA	metal-nicotianamine transporter YSL2(LOC103874307)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).