Search result

BaseInfo

ncRNA ID	bra-miR164c-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA9:2025610-2025700 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	3 - CACGUGUUCUACUACUCCAAC - 23
Stem-loop(if miRNA)	AACACU  C     A  C              CUA    GA   CUG       UG UGGAG AG AGGGCACGUGCGAA   AUGA  GAU   U       || ||||| || ||||||||||||||   ||||  |||       AC ACCUC UC UCUUGUGCACGUUU   UACU  UUG   G -----C  A     A  A              UUA    AG   UAC
Stem-loop sequence	AACACUUGCUGGAGAAGCAGGGCACGUGCGAACUAAUGAGAGAUCUGUGCAUGUUGAUCAUAUUUUUGCACGUGUUCUACUACUCCAACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009109641.2	ncRNA:21   CAACCUCAUCAUCUUGUGCAC   1   **|||||*||*|||||||||| targets:847   UGUGGAGAAGCAGAACACGUG   867 Target Full Sequence	2.5	PREDICTED: Brassica rapa outer envelope pore protein 16-2, chloroplastic-like (LOC103833555), mRNA	outer envelope pore protein 16-2, chloroplastic-like(LOC103833555)	coding protein	psRNATarget
XM_018653690.1	ncRNA:21   CAACCUCAUCAUCUUGUGCAC   1   |**||||*||||||||||||* targets:1352   GCGGGAGGAGUAGAACACGUC   1372 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103833994 (LOC103833994), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009110047.2	ncRNA:21   CAACCUCAUCAUCUUGUGCAC   1   |**||||*||||||||||||* targets:2830   GCGGGAGGAGUAGAACACGUC   2850 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103833994 (LOC103833994), transcript variant X1, mRNA	uncharacterized LOC103833994(LOC103833994)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).