ncRNA ID | novel_gma_miR1504 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr16:36093833-36093988 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451646 |
Length | 21 |
Mature sequence(if miRNA) | 136 - CCUGGAAAUGUUAAAGAAGCC - 156 |
Stem-loop(if miRNA) |
--CC   A      A      -------CC   A        UA             A            --A   UUCCAC     UGG AAUGUU AAGAAG         UUC UGAUAGUG  UUAGCUCAAGGAU UCACAUGAUCCA   GGA      C     ||| |||||| ||||||         ||| ||||||||  ||||||||||||| ||||||||||||   |||      U     ACC UUACAA UUCUUC         AAG ACUAUCAC  AAUCGAGUUCCUA AGUGUACUAGGU   CCU      G AAGC   C      C      UUAACAUUC   C        CC             G            CCA   UAACUA |
Stem-loop sequence | CCUGGAAAUGUUAAAGAAGCCUUCAUGAUAGUGUAUUAGCUCAAGGAUAUCACAUGAUCCAAGGAUUCCACCUGAUCAAUUCCACCUGGAUCAUGUGAGAUCCUUGAGCUAACCCACUAUCACGAACUUACAAUUCUUCUUCAACAUUCCCACGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK287124.1 |
|
3.0 | Glycine max cDNA, clone: GMFL01-44-J14 | NA | coding protein | psRNATarget | |||||||||
NM_001255495.2 |
|
3.0 | Glycine max salt tolerance protein-like (LOC100814727), mRNA | salt tolerance protein-like(LOC100814727) | coding protein | psRNATarget | |||||||||
BT093937.1 |
|
3.0 | Soybean clone JCVI-FLGm-17P8 unknown mRNA | NA | coding protein | psRNATarget |