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BaseInfo

ncRNA ID novel_gma_miR1504
Species Glycine max
Class miRNA
Genome position Chr16:36093833-36093988 [-]
Reference genome Glycine_max_v2.0
Source SRR1451646
Length 21
Mature sequence(if miRNA) 136 - CCUGGAAAUGUUAAAGAAGCC - 156
Stem-loop(if miRNA) --CC   A      A      -------CC   A        UA             A            --A   UUCCAC
    UGG AAUGUU AAGAAG         UUC UGAUAGUG  UUAGCUCAAGGAU UCACAUGAUCCA   GGA      C
    ||| |||||| ||||||         ||| ||||||||  ||||||||||||| ||||||||||||   |||      U
    ACC UUACAA UUCUUC         AAG ACUAUCAC  AAUCGAGUUCCUA AGUGUACUAGGU   CCU      G
AAGC   C      C      UUAACAUUC   C        CC             G            CCA   UAACUA
Stem-loop sequence CCUGGAAAUGUUAAAGAAGCCUUCAUGAUAGUGUAUUAGCUCAAGGAUAUCACAUGAUCCAAGGAUUCCACCUGAUCAAUUCCACCUGGAUCAUGUGAGAUCCUUGAGCUAACCCACUAUCACGAACUUACAAUUCUUCUUCAACAUUCCCACGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK287124.1
ncRNA:21   CCGAAGAAAUUGUAAAGGUCC   1
  ||*|||*|||||||||||||*
targets:87   GGGUUCGUUAACAUUUCCAGU   107

3.0 Glycine max cDNA, clone: GMFL01-44-J14 NA coding protein psRNATarget
NM_001255495.2
ncRNA:21   CCGAAGAAAUUGUAAAGGUCC   1
  ||*|||*|||||||||||||*
targets:141   GGGUUCGUUAACAUUUCCAGU   161

3.0 Glycine max salt tolerance protein-like (LOC100814727), mRNA salt tolerance protein-like(LOC100814727) coding protein psRNATarget
BT093937.1
ncRNA:21   CCGAAGAAAUUGUAAAGGUCC   1
  ||*|||*|||||||||||||*
targets:143   GGGUUCGUUAACAUUUCCAGU   163

3.0 Soybean clone JCVI-FLGm-17P8 unknown mRNA NA coding protein psRNATarget