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BaseInfo

ncRNA ID novel_gma_miR1503
Species Glycine max
Class miRNA
Genome position Chr1:50112978-50113175 [+]
Reference genome Glycine_max_v2.0
Source SRR1451646
Length 24
Mature sequence(if miRNA) 1 - CGUUACCAAGUGAUGUUGAUCGCC - 24
Stem-loop(if miRNA) --                      C     G                      C                        AUGUCAAC  CAUGGAAGAUGAAA
  CGUUACCAAGUGAUGUUGAUCG CACGU UCACGUUCUUAUUGGAUGAUGA UGUCAUGUGUCAUGUUUUGAUUGG        UC              U
  |||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||        ||
  GCAAUGGUUCACUACAACUGGC GUGCA AGUGCAAGAAUAACCUACUACU ACAGUGUACAGUACAAGACUAACC        UU              G
UG                      A     G                      A                        ------AG  AUUUUUGUUGUUAC
Stem-loop sequence CGUUACCAAGUGAUGUUGAUCGCCACGUGUCACGUUCUUAUUGGAUGAUGACUGUCAUGUGUCAUGUUUUGAUUGGAUGUCAACUCCAUGGAAGAUGAAAUGCAUUGUUGUUUUUAUUGACCAAUCAGAACAUGACAUGUGACAAUCAUCAUCCAAUAAGAACGUGAGACGUGACGGUCAACAUCACUUGGUAACGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006602607.2
ncRNA:24   CCGCUAGUUGUAGUGAACCAUUGC   1
  |*|*=|||||||||||||*|||||
targets:688   GACAGUCAACAUCACUUGCUAACG   711

1.5 PREDICTED: Glycine max transcription factor TGA7-like (LOC100794752), mRNA transcription factor TGA7-like(LOC100794752) coding protein psRNATarget
XM_014778000.1
ncRNA:24   CCGCUAGUUGUAGUGAACCAUUGC   1
  **=*||||=||||||||||||||*
targets:2977   UUUCAUCAGCAUCACUUGGUAACC   3000

2.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g09060 (LOC100819721), mRNA pentatricopeptide repeat-containing protein At3g09060(LOC100819721) coding protein psRNATarget