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BaseInfo

ncRNA ID novel_gma_miR1492
Species Glycine max
Class miRNA
Genome position Chr17:32464356-32464416 [+]
Reference genome Glycine_max_v2.0
Source SRR1294480;SRR1451652;SRR1451657;SRR1451658;SRR1294484;SRR1451662;SRR1294485;SRR2045228;SRR1295516;SRR1295517;SRR835763;SRR1295518;SRR835767;SRR1295519;SRR1295520;SRR1295521;SRR1295524;SRR1295525;SRR1295526;SRR1295527;SRR1295530;SRR1451604;SRR1451606;SRR1292928;SRR1292929;SRR1451610;SRR1451615;SRR1451619;SRR1294476;SRR1451621;SRR1451623
Length 24
Mature sequence(if miRNA) 1 - CAUUAGAAUCGAUGUAGAAGGCCU - 24
Stem-loop(if miRNA) --   -       G   U     GC UUUUU
  CAU UAGAAUC AUG AGAAG  C     U
  ||| ||||||| ||| |||||  |     U
  GUA GUUUUAG UAC UCUUC  G     A
GU   C       A   -     UA UGAUG
Stem-loop sequence CAUUAGAAUCGAUGUAGAAGGCCUUUUUUUAGUAGUGAUCUUCUCAUAGAUUUUGCAUGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003539359.3
ncRNA:24   UCCGGAAGAUGUAGCUAAGAUUAC   1
  ||*||||||||||||=||||||||
targets:2685   AGUCCUUCUACAUCGGUUCUAAUG   2708

1.5 PREDICTED: Glycine max MLO-like protein 6 (LOC100776714), mRNA MLO-like protein 6(LOC100776714) coding protein psRNATarget
XM_006588741.2
ncRNA:24   UCCGGAAGAUGUAGCUAAGAUUAC   1
  ***=*|||||||||||||||||**
targets:2873   CACUAUUCUACAUCGAUUCUAACA   2896

2.5 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102670366), transcript variant X2, mRNA phosphoinositide phosphatase SAC1-like(LOC102670366) coding protein psRNATarget
XM_014763017.1
ncRNA:24   UCCGGAAGAUGUAGCUAAGAUUAC   1
  ***=*|||||||||||||||||**
targets:2969   CACUAUUCUACAUCGAUUCUAACA   2992

2.5 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102660101), transcript variant X1, mRNA phosphoinositide phosphatase SAC1-like(LOC102660101) coding protein psRNATarget