ncRNA ID | bra-miR9560a-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA9:1983782-1983913 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 82 - UCAUAUUAGUUCUACCUCCUGUUG - 105 |
Stem-loop(if miRNA) |
UU         GA       -   U  A UG     U        A           G   --A  AG   AUCUUAUUU  AGAUUAA GUG GU U  ACAGG GGUGGAAC AAUAUGAGUUU UAU   GU  U   |||||||||  ||||||| ||| || |  ||||| |||||||| ||||||||||| |||   ||   UAGAAUAAG  UCUAAUU CAC CG A  UGUCC CCAUCUUG UUAUACUCAAA GUA   CA  C UU         --       A   C  A GU     U        A           -   AAA  AG |
Stem-loop sequence | UUAUCUUAUUUGAAGAUUAAGUGUGUAUUGACAGGUGGUGGAACAAAUAUGAGUUUGUAUAGUAGUCGAACAAAAUGAAACUCAUAUUAGUUCUACCUCCUGUUGAAGCCCACAUUAAUCUGAAUAAGAUUU |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |