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BaseInfo

ncRNA ID	novel_gma_miR1482
Species	Glycine max
Class	miRNA
Genome position	Chr10:1745299-1745470 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1294480
Length	24
Mature sequence(if miRNA)	149 - ACAUGACACGUGACAAUCAACAUC - 172
Stem-loop(if miRNA)	--UA   UC             A            A   AU     C          C     AAAU    ACUCC      --     AA     UUG  UGUCACGUGUCAU UUUUUAUUGGAU AUG  UGUCA GUGUCAUGUU UGAUU    GUCA     AUGAAA  GAUAG  U     |||  ||||||||||||| |||||||||||| |||  ||||| |||||||||| |||||    ||||     ||||||  |||||     AAC  ACAGUGCACAGUA AAGAAUAAUCUA UAC  ACAGU CACAGUACAA ACUAA    CAGU     UACUUU  UUGUU  G CUAC   UA             C            C   CG     A          C     ---C    -----      UG     AA
Stem-loop sequence	UAUUGUCUGUCACGUGUCAUAUUUUUAUUGGAUAAUGAUUGUCACGUGUCAUGUUCUGAUUAAAUGUCAACUCCAUGAAAGAUAGAAUGAAUUGUUGUUUUCAUUGACCAAUCACAACAUGACACAUGACAGCCAUCAUCUAAUAAGAACAUGACACGUGACAAUCAACAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ242574.1	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   ||||*|||*||||||||||||||| targets:9   GAUGAUGACUGUCACGUGUCAUGU   32 Target Full Sequence	1.0	Sequence 8569 from Patent EP2985353	NA	coding protein	psRNATarget
HI410444.1	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   ||||*|||*||||||||||||||| targets:9   GAUGAUGACUGUCACGUGUCAUGU   32 Target Full Sequence	1.0	Sequence 8569 from Patent EP2074227	NA	coding protein	psRNATarget
JB170905.1	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   ||||*|||*||||||||||||||| targets:9   GAUGAUGACUGUCACGUGUCAUGU   32 Target Full Sequence	1.0	Sequence 8569 from Patent EP2559767	NA	coding protein	psRNATarget
JB170906.1	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   ||||*|||*||||||||||||||| targets:70   GAUGAUGACUGUCACGUGUCAUGU   93 Target Full Sequence	1.0	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
HI410445.1	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   ||||*|||*||||||||||||||| targets:70   GAUGAUGACUGUCACGUGUCAUGU   93 Target Full Sequence	1.0	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242575.1	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   ||||*|||*||||||||||||||| targets:70   GAUGAUGACUGUCACGUGUCAUGU   93 Target Full Sequence	1.0	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
XM_014762964.1	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   *||||||||||||||||||||*|| targets:162   AAUGUUGAUUGUCACGUGUCACGU   185 Target Full Sequence	1.5	PREDICTED: Glycine max fasciclin-like arabinogalactan protein 1 (LOC106794953), mRNA	fasciclin-like arabinogalactan protein 1(LOC106794953)	coding protein	psRNATarget
XM_006602607.2	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   ||||*|||||||||||||||||*| targets:559   GAUGAUGAUUGUCACGUGUCAUAU   582 Target Full Sequence	1.5	PREDICTED: Glycine max transcription factor TGA7-like (LOC100794752), mRNA	transcription factor TGA7-like(LOC100794752)	coding protein	psRNATarget
JB170936.1	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   *|||*|||*|*||||||||||||| targets:99   AAUGAUGACUUUCACGUGUCAUGU   122 Target Full Sequence	2.0	Sequence 8600 from Patent EP2559767	NA	coding protein	psRNATarget
HI410475.1	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   *|||*|||*|*||||||||||||| targets:99   AAUGAUGACUUUCACGUGUCAUGU   122 Target Full Sequence	2.0	Sequence 8600 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242605.1	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   *|||*|||*|*||||||||||||| targets:99   AAUGAUGACUUUCACGUGUCAUGU   122 Target Full Sequence	2.0	Sequence 8600 from Patent EP2985353	NA	coding protein	psRNATarget
XM_006573624.2	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   *|||*|||*|*||||||||||||| targets:1508   AAUGAUGACUUUCACGUGUCAUGU   1531 Target Full Sequence	2.0	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X2, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
XM_006573623.2	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   *|||*|||*|*||||||||||||| targets:1520   AAUGAUGACUUUCACGUGUCAUGU   1543 Target Full Sequence	2.0	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X1, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
XM_006602607.2	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   ||||||||*||||||||||||*|| targets:527   GAUGUUGACUGUCACGUGUCACGU   550 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor TGA7-like (LOC100794752), mRNA	transcription factor TGA7-like(LOC100794752)	coding protein	psRNATarget
XM_003518407.3	ncRNA:24   CUACAACUAACAGUGCACAGUACA   1   *||*||||*||||||||||||*|| targets:1628   AAUUUUGACUGUCACGUGUCACGU   1651 Target Full Sequence	2.5	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100803577), mRNA	UPF0481 protein At3g47200-like(LOC100803577)	coding protein	psRNATarget