Search result

BaseInfo

ncRNA ID novel_gma_miR1481
Species Glycine max
Class miRNA
Genome position Chr12:22877281-22877373 [-]
Reference genome Glycine_max_v2.0
Source SRR1451646;SRR1451650;SRR1451658;SRR1451608;SRR1451610;SRR1451611;SRR1451621
Length 24
Mature sequence(if miRNA) 70 - AUUUUGAAUUUGAAUUUUGAACCU - 93
Stem-loop(if miRNA) --A                UG --ACCU  AAUCGAUUACCAGAUGU
   UUUUGAAUUUGAAUUU  A      GU                 U
   ||||||||||||||||  |      ||                 U
   AAAAUUUAAACUUAAA  U      GU                 G
CUG                GU CUCAAA  AACGACCAUUAGCUAAU
Stem-loop sequence AUUUUGAAUUUGAAUUUUGAACCUGUAAUCGAUUACCAGAUGUUUGUAAUCGAUUACCAGCAAUGAAACUCUUGAAAUUCAAAUUUAAAAGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003516345.3
ncRNA:24   UCCA---AGUUUUAAGUUUAAGUUUUA   1
  |||*---||||||||||||*|||||||
targets:189   AGGAAAAUCAAAAUUCAAAAUCAAAAU   215

1.5 PREDICTED: Glycine max protein trichome birefringence-like 35 (LOC100789791), mRNA protein trichome birefringence-like 35(LOC100789791) coding protein psRNATarget
XM_003518412.3
ncRNA:24   UCCAAGUUUUAAGUUUAAGUUUUA   1
  ****|||||||||||||||*||||
targets:134   UAAAUCAAAAUUCAAAUUCCAAAU   157

1.5 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4 (LOC100806769), mRNA BTB/POZ and MATH domain-containing protein 4(LOC100806769) coding protein psRNATarget