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BaseInfo

ncRNA ID novel_gma_miR1480
Species Glycine max
Class miRNA
Genome position Chr1:19747170-19747302 [+]
Reference genome Glycine_max_v2.0
Source SRR1451646
Length 24
Mature sequence(if miRNA) 1 - UGAAAACUGAUGUCGUUAAGCACU - 24
Stem-loop(if miRNA) --      C          A                                       -----    A
  UGAAAA UGAUGUCGUU AGCACUUACAACAUCGGUUUUCAAAUAACCGAUGUUAAA     ACUG A
  |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||     ||||
  AUUUUU GCUACAGCAA UUGUGAAUGUUGUAGCCAAAAGUUUAUUGGCUACAAUUU     UGAU U
AA      A          C                                       UAGUG    U
Stem-loop sequence UGAAAACUGAUGUCGUUAAGCACUUACAACAUCGGUUUUCAAAUAACCGAUGUUAAAACUGAAUUUAGUGUGAUUUUAACAUCGGUUAUUUGAAAACCGAUGUUGUAAGUGUUCAACGACAUCGAUUUUUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014769994.1
ncRNA:24   UCACGAAUUGCUGUAGUCAAAAGU   1
  *****||||=|||||||||||||=
targets:80   UAAAAUUAAUGACAUCAGUUUUCG   103

2.0 PREDICTED: Glycine max vignain-like (LOC100806581), mRNA vignain-like(LOC100806581) coding protein psRNATarget