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BaseInfo

ncRNA ID bra-miR9560a-5p
Species Brassica rapa
Class miRNA
Genome position chrA9:1983782-1983913 [+]
Reference genome Brapa_1.1
Source miRBase
Length 24
Mature sequence(if miRNA) 31 - ACAGGUGGUGGAACAAAUAUGAGU - 54
Stem-loop(if miRNA) UU         GA       -   U  A UG     U        A           G   --A  AG
  AUCUUAUUU  AGAUUAA GUG GU U  ACAGG GGUGGAAC AAUAUGAGUUU UAU   GU  U
  |||||||||  ||||||| ||| || |  ||||| |||||||| ||||||||||| |||   ||
  UAGAAUAAG  UCUAAUU CAC CG A  UGUCC CCAUCUUG UUAUACUCAAA GUA   CA  C
UU         --       A   C  A GU     U        A           -   AAA  AG
Stem-loop sequence UUAUCUUAUUUGAAGAUUAAGUGUGUAUUGACAGGUGGUGGAACAAAUAUGAGUUUGUAUAGUAGUCGAACAAAAUGAAACUCAUAUUAGUUCUACCUCCUGUUGAAGCCCACAUUAAUCUGAAUAAGAUUU

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).