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BaseInfo

ncRNA ID novel_gma_miR1470
Species Glycine max
Class miRNA
Genome position Chr11:33704850-33704941 [+]
Reference genome Glycine_max_v2.0
Source SRR1451646;SRR1451616
Length 24
Mature sequence(if miRNA) 1 - AUGUCGAGAAGAGUGAAGAGUUCC - 24
Stem-loop(if miRNA) --   U         U  A     -CCAA      UAAAA    GAG
  AUG CGAGAAGAG GA GAGUU     AUGCAG     ACAU   A
  ||| ||||||||| || |||||     ||||||     ||||
  UAC GUUCUUCUC CU CUCAG     UGUGUU     UGUG   G
CG   -         U  C     CAUGA      CAAAG    AAG
Stem-loop sequence AUGUCGAGAAGAGUGAAGAGUUCCAAAUGCAGUAAAAACAUGAGAGGAAGUGUGAAACUUGUGUAGUACGACUCCUCUCUCUUCUUGCAUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014774519.1
ncRNA:24   CCUUGAGAAGUGAGAAGAGCUGUA   1
  ||=|||||||||||||||||||||
targets:111   GGGACUCUUCACUCUUCUCGACAU   134

0.0 PREDICTED: Glycine max uncharacterized LOC100779553 (LOC100779553), transcript variant X1, mRNA uncharacterized LOC100779553(LOC100779553) coding protein psRNATarget
BT097983.1
ncRNA:24   CCUUGAGAAGUGAGAAGAGCUGUA   1
  **=|=|||||*|||||||||||||
targets:1167   CCGAUUCUUCUCUCUUCUCGACAU   1190

1.0 Soybean clone JCVI-FLGm-26B11 unknown mRNA NA coding protein psRNATarget
BT094504.1
ncRNA:24   CCUUGAGAAGUGAGAAGAGCUGUA   1
  ||=||||||||||||||||*|||*
targets:74   GGGACUCUUCACUCUUCUCCACAC   97

2.5 Soybean clone JCVI-FLGm-18D4 unknown mRNA NA coding protein psRNATarget
XM_014776215.1
ncRNA:24   CCUUGAGAAGUGAGAAGAGCUGUA   1
  ||=||||||||||||||||*|||*
targets:126   GGGACUCUUCACUCUUCUCCACAC   149

2.5 PREDICTED: Glycine max uncharacterized LOC100812576 (LOC100812576), transcript variant X1, mRNA uncharacterized LOC100812576(LOC100812576) coding protein psRNATarget