| ncRNA ID | bra-miR5720 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA9:640193-640482 [+] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 188 - UUGUGAUUUGGUUGGAAUAUC - 208 |
| Stem-loop(if miRNA) |
------- U CG UUA ----- C U AA CUG AAACUUGUAAAAGAAAAUCAUCGUACAGUUAAAA UUCUACGAUAAUUCAUU AAGUUUUGCAA AUGUUAUACAGAUAUUCUAACCAAAUCACAAAACCAUAAUACUGUA UACCUAUAUAU UCG CUA AG C |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| || UUUGAGCAUUUUCUUUUAGUAGCAUGUCAAUUUU AAGGUGCUAUUAAGUAA UUCAAAACGUU UACAAUAUGUCUAUAAGGUUGGUUUAGUGUUUUGGUAUUAUGACAU AUGGAUAUAUA AGU GAU UC A UUCUUCU U AU --- AUCAU A - GA UAU |
| Stem-loop sequence | AAACUUGUAAAAGAAAAUCAUCGUACAGUUAAAAUUUCUACGAUAAUUCAUUCGAAGUUUUGCAAUUAAUGUUAUACAGAUAUUCUAACCAAAUCACAAAACCAUAAUACUGUAUACCUAUAUAUCUCGUCUAAAAGCUGCAUAUCUAGUAGUGAAAUAUAUAGGUAUACUAUACAGUAUUAUGGUUUUGUGAUUUGGUUGGAAUAUCUGUAUAACAUUUGCAAAACUUUAAAUGAAUUAUCGUGGAAUUUUUAACUGUACGAUGAUUUUCUUUUACGAGUUUUCUUCUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_018653550.1 |
|
3.0 | PREDICTED: Brassica rapa DUF724 domain-containing protein 2-like (LOC103833841), mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012). |