ncRNA ID | novel_gma_miR1460 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr14:48696754-48696973 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1294480 |
Length | 24 |
Mature sequence(if miRNA) | 1 - CAUAAACACGGAUCCACAAAUGUC - 24 |
Stem-loop(if miRNA) |
--        A                  G    C                AUAU                      G    G    U         A     AGA  AA   CAUUUGUG AUUCGUGUUUAUGAGAAA AUGA UAUGAUCGCUUUGUAG    UGUAUAUUAUCAUGUCAUUUUU UACA GUAU CAUUCAUUU AAAUA   AU  U   |||||||| |||||||||||||||||| |||| ||||||||||||||||    |||||||||||||||||||||| |||| |||| ||||||||| |||||   ||   GUAAACAC UAGGCACAAAUACUCUUU UACU AUACUAGCGAAACAUC    ACAUAUAAUAGUACAGUAAAAA AUGU CAUA GUAAGUAAA UUUAU   UA  A CU        C                  A    U                CACU                      A    A    U         A     AUG  AA |
Stem-loop sequence | CAUUUGUGAAUUCGUGUUUAUGAGAAAGAUGACUAUGAUCGCUUUGUAGAUAUUGUAUAUUAUCAUGUCAUUUUUGUACAGGUAUUCAUUCAUUUAAAAUAAGAAUAAUAAAAUGUAUAUUUAAAAUGAAUGUAUACAUGUAAAAAAAUGACAUGAUAAUAUACAUCACCUACAAAGCGAUCAUAUUCAUAUUUCUCAUAAACACGGAUCCACAAAUGUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001255851.2 |
|
2.5 | Glycine max uncharacterized LOC100795618 (LOC100795618), mRNA | uncharacterized LOC100795618(LOC100795618) | coding protein | psRNATarget | |||||||||
BT098546.1 |
|
2.5 | Soybean clone JCVI-FLGm-23O19 unknown mRNA | NA | coding protein | psRNATarget |