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BaseInfo

ncRNA ID novel_gma_miR1460
Species Glycine max
Class miRNA
Genome position Chr14:48696754-48696973 [-]
Reference genome Glycine_max_v2.0
Source SRR1294480
Length 24
Mature sequence(if miRNA) 1 - CAUAAACACGGAUCCACAAAUGUC - 24
Stem-loop(if miRNA) --        A                  G    C                AUAU                      G    G    U         A     AGA  AA
  CAUUUGUG AUUCGUGUUUAUGAGAAA AUGA UAUGAUCGCUUUGUAG    UGUAUAUUAUCAUGUCAUUUUU UACA GUAU CAUUCAUUU AAAUA   AU  U
  |||||||| |||||||||||||||||| |||| ||||||||||||||||    |||||||||||||||||||||| |||| |||| ||||||||| |||||   ||
  GUAAACAC UAGGCACAAAUACUCUUU UACU AUACUAGCGAAACAUC    ACAUAUAAUAGUACAGUAAAAA AUGU CAUA GUAAGUAAA UUUAU   UA  A
CU        C                  A    U                CACU                      A    A    U         A     AUG  AA
Stem-loop sequence CAUUUGUGAAUUCGUGUUUAUGAGAAAGAUGACUAUGAUCGCUUUGUAGAUAUUGUAUAUUAUCAUGUCAUUUUUGUACAGGUAUUCAUUCAUUUAAAAUAAGAAUAAUAAAAUGUAUAUUUAAAAUGAAUGUAUACAUGUAAAAAAAUGACAUGAUAAUAUACAUCACCUACAAAGCGAUCAUAUUCAUAUUUCUCAUAAACACGGAUCCACAAAUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001255851.2
ncRNA:24   CUGU----AAACACCUAGGCACAAAUAC   1
  |=||----||||*||||||*||||||||
targets:822   GGCAAGCCUUUGAGGAUCCUUGUUUAUG   849

2.5 Glycine max uncharacterized LOC100795618 (LOC100795618), mRNA uncharacterized LOC100795618(LOC100795618) coding protein psRNATarget
BT098546.1
ncRNA:24   CUGU----AAACACCUAGGCACAAAUAC   1
  |=||----||||*||||||*||||||||
targets:824   GGCAAGCCUUUGAGGAUCCUUGUUUAUG   851

2.5 Soybean clone JCVI-FLGm-23O19 unknown mRNA NA coding protein psRNATarget