Search result

BaseInfo

ncRNA ID novel_gma_miR1454
Species Glycine max
Class miRNA
Genome position Chr4:7578193-7578273 [+]
Reference genome Glycine_max_v2.0
Source SRR1451645
Length 20
Mature sequence(if miRNA) 1 - UUAGAUUUUGGGUUUUGGUC - 20
Stem-loop(if miRNA) --     U         U               ----C   A
  UUAGA UUUGGGUUU GGUCUAACUUAACCC     ACC A
  ||||| ||||||||| |||||||||||||||     ||| G
  AAUCU AAACUCAAA CCGGAUUGAGUUGGG     UGG U
AG     U         C               AUGUU   U
Stem-loop sequence UUAGAUUUUGGGUUUUGGUCUAACUUAACCCCACCAAGUUGGUUUGUAGGGUUGAGUUAGGCCCAAACUCAAAUUCUAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014765461.1
ncRNA:20   CUGGUUUUGGGUUUUAGAUU   1
  *|||||||=||||||||||*
targets:3586   AACCAAAAUCCAAAAUCUAC   3605

2.5 PREDICTED: Glycine max ABC transporter B family member 4-like (LOC100798707), transcript variant X2, mRNA ABC transporter B family member 4-like(LOC100798707) coding protein psRNATarget
XM_003541282.3
ncRNA:20   CUGGUUUUGGGUUUUAGAUU   1
  *|||||||=||||||||||*
targets:3602   AACCAAAAUCCAAAAUCUAC   3621

2.5 PREDICTED: Glycine max ABC transporter B family member 4-like (LOC100798707), transcript variant X1, mRNA ABC transporter B family member 4-like(LOC100798707) coding protein psRNATarget
XM_003523546.3
ncRNA:20   CUGGUUUUGGGUUUUAGAUU   1
  **|||=|||||||||||||*
targets:266   AUCCAGAACCCAAAAUCUAU   285

3.0 PREDICTED: Glycine max uncharacterized LOC100808615 (LOC100808615), mRNA uncharacterized LOC100808615(LOC100808615) coding protein psRNATarget