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BaseInfo

ncRNA ID novel_gma_miR1441
Species Glycine max
Class miRNA
Genome position Chr17:6361814-6361897 [-]
Reference genome Glycine_max_v2.0
Source SRR1451645;SRR1451649;SRR1451657;SRR1451661;SRR1451663;SRR1451664;SRR3160569;SRR1451613;SRR1451615;SRR1451616;SRR1451618;SRR1451620
Length 21
Mature sequence(if miRNA) 1 - CGAAUUGUCAAUCUGUAUGUU - 21
Stem-loop(if miRNA) --          AC    C         U    UAAAA     U
  CAUGCGGAUU  CAAU UGUAUGGCU UUUU     ACUAU U
  ||||||||||  |||| ||||||||| ||||     ||||| U
  GUAUGUCUAA  GUUA GCAUACUGA AAAG     UGAUA U
UU          CU    A         U    -----     U
Stem-loop sequence CAUGCGGAUUACCAAUCUGUAUGGCUUUUUUUAAAAACUAUUUUUUAUAGUGAAAUAGUCAUACGAAUUGUCAAUCUGUAUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003538112.3
ncRNA:21   UUGUAUGUCUAACUGUUAAGC   1
  |=||*|*|||||||||||||*
targets:2178   AGCAAAAAGAUUGACAAUUCU   2198

3.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100810558), mRNA auxin response factor 18-like(LOC100810558) coding protein psRNATarget
XM_003540137.3
ncRNA:21   UUGUAUGUCUAACUGUUAAGC   1
  |=||*|*|||||||||||||*
targets:2291   AGCAAAAAGAUUGACAAUUCU   2311

3.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100778135), transcript variant X1, mRNA auxin response factor 18-like(LOC100778135) coding protein psRNATarget
XM_006592639.2
ncRNA:21   UUGUAUGUCUAACUGUUAAGC   1
  |=||*|*|||||||||||||*
targets:2338   AGCAAAAAGAUUGACAAUUCU   2358

3.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100778135), transcript variant X2, mRNA auxin response factor 18-like(LOC100778135) coding protein psRNATarget
XM_003539718.3
ncRNA:21   UUGUAUGUCUAACUGUUAAGC   1
  |=||*|*|||||||||||||*
targets:2226   AGCAAAAAGAUUGACAAUUCU   2246

3.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100814686), mRNA auxin response factor 18-like(LOC100814686) coding protein psRNATarget