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BaseInfo

ncRNA ID novel_gma_miR1432
Species Glycine max
Class miRNA
Genome position Chr12:12331031-12331216 [+]
Reference genome Glycine_max_v2.0
Source SRR1451644
Length 21
Mature sequence(if miRNA) 166 - AAACAGUAAAAUCUAAAGGAC - 186
Stem-loop(if miRNA) --    A              C     G  A                         G    G    AAA        U  A           G
  CCUU AGAUUUUACUGUUU UUUUU CU AUAUGUAAAUAUAAAUGGUAUAAGG UAUG CGUA   ACAUGGUC AU UUUACUUCUAA A
  |||| |||||||||||||| ||||| || ||||||||||||||||||||||||| |||| ||||   |||||||| || ||||||||||| U
  GGAA UCUAAAAUGACAAA AAAAA GA UAUACAUUUAUAUUUAUUAUAUUCC AUAC GUAU   UGUACCAG UA AAAUGGGGAUU U
CA    A              A     A  A                         A    G    CCC        -  A           G
Stem-loop sequence CCUUAAGAUUUUACUGUUUCUUUUUGCUAAUAUGUAAAUAUAAAUGGUAUAAGGGUAUGGCGUAAAAACAUGGUCUAUAUUUACUUCUAAGAUUGUUAGGGGUAAAAAUGACCAUGUCCCUAUGGCAUAACCUUAUAUUAUUUAUAUUUACAUAUAAGAAAAAAAAAACAGUAAAAUCUAAAGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006593805.2
ncRNA:21   CAGGAAAUCUAAAAUGACAAA   1
  ||||||*||||||||||||||
targets:1503   GUCCUUCAGAUUUUACUGUUU   1523

1.0 PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X2, mRNA uncharacterized LOC100783198(LOC100783198) coding protein psRNATarget
XM_006593804.2
ncRNA:21   CAGGAAAUCUAAAAUGACAAA   1
  ||||||*||||||||||||||
targets:1527   GUCCUUCAGAUUUUACUGUUU   1547

1.0 PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X1, mRNA uncharacterized LOC100783198(LOC100783198) coding protein psRNATarget
XM_006583825.2
ncRNA:21   CAGGAAAUCUAAAAUGACAAA   1
  |*|||||=||||||||||*||
targets:498   GCCCUUUGGAUUUUACUGGUU   518

2.5 PREDICTED: Glycine max probable receptor-like protein kinase At1g49730 (LOC100807955), mRNA probable receptor-like protein kinase At1g49730(LOC100807955) coding protein psRNATarget
XM_003528784.3
ncRNA:21   CAGGAAAUCUAAAAUGACAAA   1
  ||=|*|*||||||||||||||
targets:1693   GUUCCUGAGAUUUUACUGUUU   1713

3.0 PREDICTED: Glycine max uncharacterized protein At1g01500-like (LOC100784977), mRNA uncharacterized protein At1g01500-like(LOC100784977) coding protein psRNATarget