ncRNA ID | novel_gma_miR1432 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr12:12331031-12331216 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451644 |
Length | 21 |
Mature sequence(if miRNA) | 166 - AAACAGUAAAAUCUAAAGGAC - 186 |
Stem-loop(if miRNA) |
--    A              C     G  A                         G    G    AAA        U  A           G   CCUU AGAUUUUACUGUUU UUUUU CU AUAUGUAAAUAUAAAUGGUAUAAGG UAUG CGUA   ACAUGGUC AU UUUACUUCUAA A   |||| |||||||||||||| ||||| || ||||||||||||||||||||||||| |||| ||||   |||||||| || ||||||||||| U   GGAA UCUAAAAUGACAAA AAAAA GA UAUACAUUUAUAUUUAUUAUAUUCC AUAC GUAU   UGUACCAG UA AAAUGGGGAUU U CA    A              A     A  A                         A    G    CCC        -  A           G |
Stem-loop sequence | CCUUAAGAUUUUACUGUUUCUUUUUGCUAAUAUGUAAAUAUAAAUGGUAUAAGGGUAUGGCGUAAAAACAUGGUCUAUAUUUACUUCUAAGAUUGUUAGGGGUAAAAAUGACCAUGUCCCUAUGGCAUAACCUUAUAUUAUUUAUAUUUACAUAUAAGAAAAAAAAAACAGUAAAAUCUAAAGGAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006593805.2 |
|
1.0 | PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X2, mRNA | uncharacterized LOC100783198(LOC100783198) | coding protein | psRNATarget | |||||||||
XM_006593804.2 |
|
1.0 | PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X1, mRNA | uncharacterized LOC100783198(LOC100783198) | coding protein | psRNATarget | |||||||||
XM_006583825.2 |
|
2.5 | PREDICTED: Glycine max probable receptor-like protein kinase At1g49730 (LOC100807955), mRNA | probable receptor-like protein kinase At1g49730(LOC100807955) | coding protein | psRNATarget | |||||||||
XM_003528784.3 |
|
3.0 | PREDICTED: Glycine max uncharacterized protein At1g01500-like (LOC100784977), mRNA | uncharacterized protein At1g01500-like(LOC100784977) | coding protein | psRNATarget |