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BaseInfo

ncRNA ID	bra-miR5724
Species	Brassica rapa
Class	miRNA
Genome position	chrA8:13793832-13794141 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	89 - AACCGCCGGUUUGAUAAUAGC - 109
Stem-loop(if miRNA)	-    UU       --------    CU C    GUG           U      GAUGCAUUG     ---                -UA   A   AG             G        C    G          AUGAACAUAUCCA   AUCACCAUAAACGGUGAGA  CAGA  GUCUACA        GAUG  A AACA   AGGAGUUUGGU GGAGAU         ACGUU   GUUGAUAGUGCAAAAA   UAG GAC  UAACCGCCGGUUU AUAAUAGC UUUA GGUGAAUUGG             UGC                   C  ||||  |||||||        ||||  | ||||   ||||||||||| ||||||         |||||   ||||||||||||||||   ||| |||  ||||||||||||| |||||||| |||| ||||||||||             |||                   A  GUCU  CGGGUGU        CUAC  U UUGU   UCCUCAAGCCA CCUUUA         UGCAA   CAACUAUCACGUUUUU   AUC CUG  AUUGGCGGCCAAA UAUUAUCG AAAU CCGCUUAACC             CUC                   G A    --       ACUAUAAA    UU A    --A           U      ---------     CCG                UAC   G   AG             A        A    G          -------------   GAACGAGAACACCAAGAAC
Stem-loop sequence	CAGAUUGUCUACAGAUGCUACAACAGUGAGGAGUUUGGUUGGAGAUGAUGCAUUGACGUUGUUGAUAGUGCAAAAAUAUAGAGACAGUAACCGCCGGUUUGAUAAUAGCCUUUAGGGUGAAUUGGAUGAACAUAUCCAUGCAUCACCAUAAACGGUGAGACAGCAAGAACCACAAGAGCAAGCUCCCAAUUCGCCGUAAAAGCUAUUAUAAAACCGGCGGUUAGAGUCGCUACAUUUUUUGCACUAUCAACGCCAACGUAUUUCCUACCGAACUCCUAUGUUAUUUCAUCAAAUAUCAUGUGGGCUCUGA

Reference

1	PMID:22025521 "Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012).