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BaseInfo

ncRNA ID	bra-miR156e-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA8:13509380-13509498 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	23
Mature sequence(if miRNA)	18 - UGCUCACCUCUCUUUCUGUCAGU - 40
Stem-loop(if miRNA)	GAAAUGCAACA     -------           -     -       U    AG   CU     GU            GAGAA       AACUGACAGAA GAGAG UGAGCAC UGCA  GCA  GUUAU  G            |||||       ||||||||||| ||||| ||||||| ||||  |||  |||||            CUCUU       UUGACUGUCUU CUCUC ACUCGUG GUGU  CGU  CAAUA  U -------UUCG     CAGUCCG           U     C       C    -G   UU     AC
Stem-loop sequence	GAAAUGCAACAGAGAAAACUGACAGAAGAGAGUGAGCACUUGCAAGGCACUGUUAUGUGUCAAUAACUUUGCGUGUGCGUGCUCACCUCUCUUUCUGUCAGUUGCCUGACUUCUCGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009140755.2	ncRNA:23   UGACUGUCUUUCUCUCCACUCGU   1   |||*||||||||||||*|||||| targets:150   ACUUACAGAAAGAGAGAUGAGCA   172 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X2, mRNA	squamosa promoter-binding-like protein 15(LOC103863019)	coding protein	psRNATarget
XM_009140754.2	ncRNA:23   UGACUGUCUUUCUCUCCACUCGU   1   |||*||||||||||||*|||||| targets:147   ACUUACAGAAAGAGAGAUGAGCA   169 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X1, mRNA	squamosa promoter-binding-like protein 15(LOC103863019)	coding protein	psRNATarget
XM_009117651.2	ncRNA:23   UGACUGUCUUUCUCUCCACUCGU   1   |=**||||=||||||||||||*| targets:2085   AUAAACAGGAAGAGAGGUGAGAA   2107 Target Full Sequence	2.5	PREDICTED: Brassica rapa zinc finger CCCH domain-containing protein 46 (LOC103841132), transcript variant X2, mRNA	zinc finger CCCH domain-containing protein 46(LOC103841132)	coding protein	psRNATarget
XM_009117650.2	ncRNA:23   UGACUGUCUUUCUCUCCACUCGU   1   |=**||||=||||||||||||*| targets:2091   AUAAACAGGAAGAGAGGUGAGAA   2113 Target Full Sequence	2.5	PREDICTED: Brassica rapa zinc finger CCCH domain-containing protein 46 (LOC103841132), transcript variant X1, mRNA	zinc finger CCCH domain-containing protein 46(LOC103841132)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).