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BaseInfo

ncRNA ID novel_gma_miR1399
Species Glycine max
Class miRNA
Genome position Chr18:43733886-43733999 [+]
Reference genome Glycine_max_v2.0
Source SRR1451644
Length 21
Mature sequence(if miRNA) 94 - UUUUUAUGUUGAUUCUACACU - 114
Stem-loop(if miRNA) --G   U        UC      GUU          ---CCAUC   CA  AA   A  U
   GUA GGAUCAAC  AAAAAG   AUUGUGCUUA        CAC  UC  AGA AU U
   ||| ||||||||  ||||||   ||||||||||        |||  ||  ||| || U
   CAU CUUAGUUG  UUUUUU   UAAUACGAGU        GUG  AG  UCU UA A
UCA   -        UA      ---          AAUUUACA   UA  CA   C  U
Stem-loop sequence GGUAUGGAUCAACUCAAAAAGGUUAUUGUGCUUACCAUCCACCAUCAAAGAAAUUUUAUAUCUCUACGAAUGUGACAUUUAAUGAGCAUAAUUUUUUUAUGUUGAUUCUACACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006581438.2
ncRNA:21   UCACAUCUUAGUUGUAUUUUU   1
  ****||||||||||||||||*
targets:104   UUAUUAGAAUCAACAUAAAAU   124

3.0 PREDICTED: Glycine max zinc-finger homeodomain protein 2-like (LOC100820567), transcript variant X2, mRNA zinc-finger homeodomain protein 2-like(LOC100820567) coding protein psRNATarget
XM_003526491.3
ncRNA:21   UCACAUCUUAGUUGUAUUUUU   1
  ****||||||||||||||||*
targets:82   UUAUUAGAAUCAACAUAAAAU   102

3.0 PREDICTED: Glycine max zinc-finger homeodomain protein 2-like (LOC100820567), transcript variant X1, mRNA zinc-finger homeodomain protein 2-like(LOC100820567) coding protein psRNATarget