ncRNA ID | novel_gma_miR1399 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr18:43733886-43733999 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451644 |
Length | 21 |
Mature sequence(if miRNA) | 94 - UUUUUAUGUUGAUUCUACACU - 114 |
Stem-loop(if miRNA) |
--G   U        UC      GUU          ---CCAUC   CA  AA   A  U    GUA GGAUCAAC  AAAAAG   AUUGUGCUUA        CAC  UC  AGA AU U    ||| ||||||||  ||||||   ||||||||||        |||  ||  ||| || U    CAU CUUAGUUG  UUUUUU   UAAUACGAGU        GUG  AG  UCU UA A UCA   -        UA      ---          AAUUUACA   UA  CA   C  U |
Stem-loop sequence | GGUAUGGAUCAACUCAAAAAGGUUAUUGUGCUUACCAUCCACCAUCAAAGAAAUUUUAUAUCUCUACGAAUGUGACAUUUAAUGAGCAUAAUUUUUUUAUGUUGAUUCUACACU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006581438.2 |
|
3.0 | PREDICTED: Glycine max zinc-finger homeodomain protein 2-like (LOC100820567), transcript variant X2, mRNA | zinc-finger homeodomain protein 2-like(LOC100820567) | coding protein | psRNATarget | |||||||||
XM_003526491.3 |
|
3.0 | PREDICTED: Glycine max zinc-finger homeodomain protein 2-like (LOC100820567), transcript variant X1, mRNA | zinc-finger homeodomain protein 2-like(LOC100820567) | coding protein | psRNATarget |