| ncRNA ID | bra-miR5715 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA8:11797752-11797937 [+] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 14 - ACGUGAUAAGCCUCUGAAGAA - 34 |
| Stem-loop(if miRNA) |
GUAU G C A U G ---- --C A AAG CAA CG AGCUGCUUCAAAACAAAGACCU UAGAUCAUUAC UGAUAAGC UCUGAAGAA GACGU G GC CUUC CUC GUU CU GU CC G ||||||||||| |||||||| ||||||||| ||||| | || |||| ||| ||| || || || AUCUAGUAAUG GCUAUUCG AGACUUCUU CUGCA U CG GAAG GAG CAA GA GG GU C ---- G A - - G AACA AAA A GAA AAA -- AACUGACUCAAACAAUGGUCAA |
| Stem-loop sequence | GUAUUAGAUCAUUACGUGAUAAGCCUCUGAAGAAAGACGUUGGGCCUUCCCUCAGUUAAGCUCAAGUCGCCAGCUGCUUCAAAACAAAGACCUGCAACUGGUAACAAACUCAGUCAAUGGGAAAAGAAGAACAGAGAAAGAAGACAAGCGUACGUCUUCUUCAGAAGCUUAUCGGGUAAUGAUCUA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_018656106.1 |
|
2.0 | PREDICTED: Brassica rapa nuclear pore complex protein NUP1-like (LOC103847375), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_018656104.1 |
|
2.0 | PREDICTED: Brassica rapa nuclear pore complex protein NUP1-like (LOC103847375), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_009124447.2 |
|
2.0 | PREDICTED: Brassica rapa nuclear pore complex protein NUP1-like (LOC103847375), transcript variant X1, mRNA | nuclear pore complex protein NUP1-like(LOC103847375) | coding protein | psRNATarget |
| 1 | PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012). |