Search result

BaseInfo

ncRNA ID novel_gma_miR1394
Species Glycine max
Class miRNA
Genome position Chr17:14184592-14184705 [-]
Reference genome Glycine_max_v2.0
Source SRR1451644
Length 21
Mature sequence(if miRNA) 1 - UUUUUAUGUUGAUUCUACACU - 21
Stem-loop(if miRNA) --G   U        UC     ------       --   C    C     CCAUCAA      
   GUA GGAUCAAC  AAAAA      GGUUAUU  GUG UUAC AUCCA       AGAUAUU
   ||| ||||||||  |||||      |||||||  ||| |||| |||||       ||||||U
   CAU CUUAGUUG  UUUUU      CCAGUAA  UAC AGUG UAGGU       UCUAUAU
UCA   -        UA     UUAAUA       UU   -    -     ----AUC      
Stem-loop sequence GGUAUGGAUCAACUCAAAAAGGUUAUUGUGCUUACCAUCCACCAUCAAAGAUAUUUUAUAUCUCUAUGGAUGUGACAUUUAAUGACCAUAAUUUUUUUAUGUUGAUUCUACACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006581438.2
ncRNA:21   UCACAUCUUAGUUGUAUUUUU   1
  ****||||||||||||||||*
targets:104   UUAUUAGAAUCAACAUAAAAU   124

3.0 PREDICTED: Glycine max zinc-finger homeodomain protein 2-like (LOC100820567), transcript variant X2, mRNA zinc-finger homeodomain protein 2-like(LOC100820567) coding protein psRNATarget
XM_003526491.3
ncRNA:21   UCACAUCUUAGUUGUAUUUUU   1
  ****||||||||||||||||*
targets:82   UUAUUAGAAUCAACAUAAAAU   102

3.0 PREDICTED: Glycine max zinc-finger homeodomain protein 2-like (LOC100820567), transcript variant X1, mRNA zinc-finger homeodomain protein 2-like(LOC100820567) coding protein psRNATarget