ncRNA ID | novel_gma_miR1394 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr17:14184592-14184705 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451644 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUUUUAUGUUGAUUCUACACU - 21 |
Stem-loop(if miRNA) |
--G   U        UC     ------       --   C    C     CCAUCAA          GUA GGAUCAAC  AAAAA      GGUUAUU  GUG UUAC AUCCA       AGAUAUU    ||| ||||||||  |||||      |||||||  ||| |||| |||||       ||||||U    CAU CUUAGUUG  UUUUU      CCAGUAA  UAC AGUG UAGGU       UCUAUAU UCA   -        UA     UUAAUA       UU   -    -     ----AUC       |
Stem-loop sequence | GGUAUGGAUCAACUCAAAAAGGUUAUUGUGCUUACCAUCCACCAUCAAAGAUAUUUUAUAUCUCUAUGGAUGUGACAUUUAAUGACCAUAAUUUUUUUAUGUUGAUUCUACACU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006581438.2 |
|
3.0 | PREDICTED: Glycine max zinc-finger homeodomain protein 2-like (LOC100820567), transcript variant X2, mRNA | zinc-finger homeodomain protein 2-like(LOC100820567) | coding protein | psRNATarget | |||||||||
XM_003526491.3 |
|
3.0 | PREDICTED: Glycine max zinc-finger homeodomain protein 2-like (LOC100820567), transcript variant X1, mRNA | zinc-finger homeodomain protein 2-like(LOC100820567) | coding protein | psRNATarget |