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BaseInfo

ncRNA ID novel_gma_miR1386
Species Glycine max
Class miRNA
Genome position Chr16:1266022-1266104 [+]
Reference genome Glycine_max_v2.0
Source SRR1451644
Length 24
Mature sequence(if miRNA) 1 - UUUCUCCCAUAAACUAAAAACAGC - 24
Stem-loop(if miRNA) --      C           A         G  -U      A
  UUUCUC CAUAAACUAAA ACAGCUUAU CA  AAGUUA A
  |||||| ||||||||||| ||||||||| ||  ||||||
  GAAGAG GUAUUUGAUUU UGUCGAAUA GU  UUCGAU A
UC      A           C         G  UU      U
Stem-loop sequence UUUCUCCCAUAAACUAAAAACAGCUUAUGCAUAAGUUAAAAUUAGCUUUUUGGAUAAGCUGUCUUUAGUUUAUGAGAGAAGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003550829.3
ncRNA:24   CGACAAAAAUCAAAUACCCUCUUU   1
  *||-||||||||||||||||*|||
targets:1274   ACU-UUUUUAGUUUAUGGGAUAAA   1296

1.5 PREDICTED: Glycine max F-box protein PP2-A12-like (LOC100777716), mRNA F-box protein PP2-A12-like(LOC100777716) coding protein psRNATarget
XM_006593880.2
ncRNA:24   CGACAAAAAUCAAAUACCCUCUUU   1
  |=||*|||||||||=||||||||=
targets:3044   GUUGAUUUUAGUUUGUGGGAGAAG   3067

2.5 PREDICTED: Glycine max phospholipid:diacylglycerol acyltransferase 1-like (LOC100779225), transcript variant X3, mRNA phospholipid:diacylglycerol acyltransferase 1-like(LOC100779225) coding protein psRNATarget
XM_003541248.3
ncRNA:24   CGACAAAAAUCAAAUACCCUCUUU   1
  |=||*|||||||||=||||||||=
targets:3198   GUUGAUUUUAGUUUGUGGGAGAAG   3221

2.5 PREDICTED: Glycine max phospholipid:diacylglycerol acyltransferase 1-like (LOC100779225), transcript variant X1, mRNA phospholipid:diacylglycerol acyltransferase 1-like(LOC100779225) coding protein psRNATarget
AK286967.1
ncRNA:24   CGACAAAAAUCAAAUACCCUCUUU   1
  |=||*||||||*|||||||||||=
targets:569   GUUGAUUUUAGCUUAUGGGAGAAG   592

2.5 Glycine max cDNA, clone: GMFL01-41-C10 NA coding protein psRNATarget