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BaseInfo

ncRNA ID novel_gma_miR1382
Species Glycine max
Class miRNA
Genome position Chr9:13998717-13998859 [+]
Reference genome Glycine_max_v2.0
Source SRR1294479;SRR2045230;SRR2045236;SRR1294477
Length 24
Mature sequence(if miRNA) 1 - ACCAAUCCGUGCCUCUUCCUCCUC - 24
Stem-loop(if miRNA) --       C    CU       C                     G     C    GCUUU      C   
  ACCAAUC GUGC  CUUCCUC UCUACCAGCUCAAUAUCUUUC UUUCA CUUU     UGUAAA UACA
  ||||||| ||||  ||||||| ||||||||||||||||||||| ||||| ||||     |||||| |||C
  UGGUUAG CACG  GAAGGAG AGAUGGUCGAGUUAUAGAAAG AAAGU GAAA     ACAUUU AUGU
CU       A    AC       A                     G     U    ACACC      A   
Stem-loop sequence ACCAAUCCGUGCCUCUUCCUCCUCUACCAGCUCAAUAUCUUUCGUUUCACCUUUGCUUUUGUAAACUACACUGUAAUUUACACCACAAAAGUUGAAAGGAAAGAUAUUGAGCUGGUAGAAGAGGAAGCAGCACAGAUUGGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779469.1
ncRNA:24   CUCCUCCUUCUCCGUGCCUAACCA   1
  ||||||||||||*|||||||||||
targets:814   GAGGAGGAAGAGCCACGGAUUGGU   837

1.5 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA SNF2 domain-containing protein CLASSY 3-like(LOC100806733) coding protein psRNATarget
XM_006586135.2
ncRNA:24   CUCCUCCUUCUCCGUGCCUAACCA   1
  ||||||||||||*|||||||||||
targets:814   GAGGAGGAAGAGCCACGGAUUGGU   837

1.5 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA SNF2 domain-containing protein CLASSY 3-like(LOC100806733) coding protein psRNATarget
XM_006591670.1
ncRNA:24   CUCCUCCUUCUCCGUGCCUAACCA   1
  ||||||||||||*|||||||||||
targets:70   GAGGAGGAAGAGCCACGGAUUGGU   93

1.5 PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828) coding protein psRNATarget