ncRNA ID | novel_gma_miR1382 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr9:13998717-13998859 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1294479;SRR2045230;SRR2045236;SRR1294477 |
Length | 24 |
Mature sequence(if miRNA) | 1 - ACCAAUCCGUGCCUCUUCCUCCUC - 24 |
Stem-loop(if miRNA) |
--       C    CU       C                     G     C    GCUUU      C      ACCAAUC GUGC  CUUCCUC UCUACCAGCUCAAUAUCUUUC UUUCA CUUU     UGUAAA UACA   ||||||| ||||  ||||||| ||||||||||||||||||||| ||||| ||||     |||||| |||C   UGGUUAG CACG  GAAGGAG AGAUGGUCGAGUUAUAGAAAG AAAGU GAAA     ACAUUU AUGU CU       A    AC       A                     G     U    ACACC      A    |
Stem-loop sequence | ACCAAUCCGUGCCUCUUCCUCCUCUACCAGCUCAAUAUCUUUCGUUUCACCUUUGCUUUUGUAAACUACACUGUAAUUUACACCACAAAAGUUGAAAGGAAAGAUAUUGAGCUGGUAGAAGAGGAAGCAGCACAGAUUGGUUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014779469.1 |
|
1.5 | PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA | SNF2 domain-containing protein CLASSY 3-like(LOC100806733) | coding protein | psRNATarget | |||||||||
XM_006586135.2 |
|
1.5 | PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA | SNF2 domain-containing protein CLASSY 3-like(LOC100806733) | coding protein | psRNATarget | |||||||||
XM_006591670.1 |
|
1.5 | PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA | glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828) | coding protein | psRNATarget |