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BaseInfo

ncRNA ID	bra-miR9552a-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA8:9143909-9144122 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	17 - CUAUCGGUCUACUCGGUCAGC - 37
Stem-loop(if miRNA)	----U    ----       C    UAUCGGUCUACUCGGUCAGCGCUAGCUUCUUCAUCACCGGACAGACUAAUCUAGUGGAGAAGCUGCAGAAGUUUAGCCUGUCCGG      GUUG    UUGUCAG AGAC                                                                                     U      ||||    ||||||| ||||                                                                                     G      UGAG    UGUAGAA GCUG                                                                                     A CUUUG    CCGC       -    AGACGCUAGCUUCUGUAAUUCUUCAACCGACUGCGACAACAACAGUCAUCUGAUAGCCAGAUGAACCAGUCGCGAUCGAAGAAGG
Stem-loop sequence	UGUUGUUGUCAGCAGACUAUCGGUCUACUCGGUCAGCGCUAGCUUCUUCAUCACCGGACAGACUAAUCUAGUGGAGAAGCUGCAGAAGUUUAGCCUGUCCGGUGAGGAAGAAGCUAGCGCUGACCAAGUAGACCGAUAGUCUACUGACAACAACAGCGUCAGCCAACUUCUUAAUGUCUUCGAUCGCAGAGUCGAAGAUGUCGCCGAGUGUUUC

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).