ncRNA ID |
zma_circ_000485 |
Species |
Zea mays |
Class |
circRNA |
Genome position |
9:136151722-136154127[-/+] |
Reference genome |
AGPv3.22 |
Source |
PlantcircBase
|
Method |
SMALT and Segemehl |
Type |
intronic |
Splice junction sequence |
CTTGTGGCGCTCTCTGCAGGTGGAGGGAGGCGAGGGGCGAGGAGAATCCAGGCGCGTGTGCTGAGAGGGGCAAGCCTGTTTCTGTTTATATAGAGCTCGTTACCTCTTCCTCCATGGACGCCGATGACTTGGCTCCATCACAGCCTGCCATCTCTTCCTCCTCTTGTCTCCCTTGTCCGCTACTGCTAGAACGAAGCGCT |
Tissues |
shoot |
Exon boundary |
Yes-No |
Splicing signals |
AC-CT |
circRNA sequence |
NA |
Genomic sequence |
CTTGTGGCGCTCTCTGCAGGTGGAGGGAGGCGAGGGGCGAGGAGAATCCAGGCGCGTGTGCTGAGAGGGGCAAGCCTGTTTCTGTTTATATAGAGCTCGTGTACGGCCATACGAGGAGGAGAGATCACACACAGCTGGGGCAACAGCACAGGATGGGATCGCCTGCCTTCTCCCTCCGAACCCGAAGGTAGGAGTGCCCAGTTAGCTGCTCTCCACCGTTAAAGGAATCGAACGGTTGGCAGCAGATTGACAGTATTTCTCTGCTTTGATGCTGGAACAGAATAAATCAAGTATACATACACATAAACAAGGCCAATAAATTGGGATCAAACTAGTTCATTCCAGCAGCAAGTATGGAGTTGAAACCATTTAAATAAACAAAAAAAATAGTACCAAGATTTAATTGAAACTAAATGCAGGCTGAGATTGACTGCATGCTCGTATTTTTATCTCCAAAAGATATATAGAACAATAATACATTTAGTTCAAAATACAGCAAGACATTTAGTTCTAGTTTTAGCTCGTGGCCGTTTACAAGATGACTTATTTTACCTTATTTTCCGCTGACCCTCTCTTGCACAAATAAATCTAAATGATGTCACTATTCCAACAGATTTTCTTTTGTTTGCATATCTCTTTTTAACCTCAAAACCGTGTTACTCCATATGTATTACAAAACTTCCAAGACTCTACCTCATCCTGAAACTTCATGCCAATTTCAGGCACCATAACAGGAAGTACGCCATGTCTAAAACATCAAGAGCAGGGTCTCAATTTTCCTTATGAGCAATAAAACAATAGAAGAACAACAAACATGAGAGTTCTATCTTTGACATGCTGCCTCCGGGATCATCTCCTACCTCTCCATTCTTAACAAGAGGTGTATATTGTCTAAAAACAGATAACAAGCTAGCAGTTTGCACAATATTATTGTTCTTCGTAAACTATCAAAAATCAGAAGAAGAATAAGTATGGGTGTTGTATTATTTGCCTTTTGTCTTCTTGATAATTCTTGTTCGGATCTTCTTCCATTAGGGATGTTATATCTCAATGTGAGAGAGAGAAAAGGAAGAAGAGATGATGCTCAGGTTGCAGAATGGAGGTTTCTGGTGCCAAAACAGAGCAAGGAGGCATTTTCCCTCCATACGGCAATAAATGCAGGTCGTTTCCCTCCACTTCGTCTGTTTCCCGCGGCATCATGTTTCGATTCATCCAACCTTTAGAGGGCGAAGGCAGACGATCCCAATCCAACAGCACAGACTCCATGCATAATCGCATATGGGTCCTAGTCGACACGGAGGATCCTCATCCCGCAAGAATGCTACAGTTAGGCCCCATTAAATTCAAGGGTATTCAATGAATATCCATTATTTTTTGCAAAAAAATTTCGATATATACATGTATGTAGTGTATATACATGGAAATAGAAAATCAATCAAATAAATGAAGAAATTCTGCTAATTTGAACCAAAATATCTCCTTCCTACATCTCATACCTAACTAGCTCAATAGATTCTCGTGGCCCATGTGGCCATGAGACCCAACGAAGTGACAAAGTCCACCTTATTACCTCATAGCAAAAAATCTCTAAACTATATTGTAGTCGCACCACGACAGAGCCACCAAAGCGCCAGCCGCCAAGTCATGGTCGTGTCTTGCCGCCCCATGTGCCCACATGGAGACACTAGCACTTTTGTCGCGCCACCGCGTCATCGCTAGGTGCCCATACCTAACTGGCTAATTGTTGTCGTCGCGTTGCACCTGACCTCATTGCTGTACCGACCGTCGTCTGAGGCTTCGATCCGTCGCAGTCAGGGCACCATCACGTGCAAGTACAAACCGCCATGGGGCAGGGTCCCATCATGTCAATGTCCAAGCTCGCCTGGCTGGTGGCCACCCGATCGTGACCTCTCCTGCTTGACCGCTTCCAGTACTTGGCTGCAGGTGAAGCCAGTAAGAGTTCCTTCGATGTATAATAATTGTGTATCAAAATTGAGACATTCCATTGCTCTGGGCTCTGCAAAACTCCAACTCTATCGATGCGTGTACTAAGTTAAGTTCCAATGAAAACTACCCCACCAAAAAAAGTTCGTTTTGAGGCTAATAATCCAGAAATTAATCAAAGCAGGGCAGTATTGATCCAAGTAGTCAGGTAGGGGAAATGAACAAGGCATGCATATACAATGCATGTGCAGCAAGCAAGTAACAACTGATGATGGATAACATGTGAACTGCAACCTCTAGCCTAGCTTGATTCCTTTTCTTCGGCCAAGAATCATGCCAGTTCACAGAAACTATGCACAAATTACCTCTTCCTCCATGGACGCCGATGACTTGGCTCCATCACAGCCTGCCATCTCTTCCTCCTCTTGTCTCCCTTGTCCGCTACTGCTAGAACGAAGCGCT |