Search result

BaseInfo

ncRNA ID	bra-miR9552b-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA8:9143815-9144063 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	109 - UGACCGAGUAGACCGAUAGUC - 129
Stem-loop(if miRNA)	-----------U   -    UCAGUAGACUAUCGGUCUACUUGGUCAGCGCUAGCUUCUUCCUCACCGGACAGGCUAAACUUCUGCAGCUUCUCCACUAGAUUAGUCUGUCCGGUGAUGAAGAAGCUAG             GUU GUUG                                                                                                             C             ||| ||||                                                                                                             G             CGG UAUG                                                                                                             C AGUUCUUUGUCU   G    CUCUGUCAUAUGGUUCACUUUCUUUGUGAGCUGAUGUAGAAGCUGAGACGUUAGCUUCUGUAAUUCUUCAACCGACAACAACAGUCGUCUGAUAGCCAGAUGAGCCAGU
Stem-loop sequence	UGUUGUUGUCAGUAGACUAUCGGUCUACUUGGUCAGCGCUAGCUUCUUCCUCACCGGACAGGCUAAACUUCUGCAGCUUCUCCACUAGAUUAGUCUGUCCGGUGAUGAAGAAGCUAGCGCUGACCGAGUAGACCGAUAGUCUGCUGACAACAACAGCCAACUUCUUAAUGUCUUCGAUUGCAGAGUCGAAGAUGUAGUCGAGUGUUUCUUUCACUUGGUAUACUGUCUCGUAUGGGCUCUGUUUCUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009104953.2	ncRNA:21   CUGAUAGCCAGAUGAGCCAGU   1   *|||||**||||||||||||* targets:2448   UACUAUGAGUCUACUCGGUCU   2468 Target Full Sequence	3.0	PREDICTED: Brassica rapa auxin efflux carrier component 7 (LOC103829294), mRNA	auxin efflux carrier component 7(LOC103829294)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).