ncRNA ID | bra-miR9552b-5p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA8:9143815-9144063 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 213 - CUAUCGGUCUACUUGGUCAGC - 233 |
Stem-loop(if miRNA) |
-----------U   -    UCAGUAGACUAUCGGUCUACUUGGUCAGCGCUAGCUUCUUCCUCACCGGACAGGCUAAACUUCUGCAGCUUCUCCACUAGAUUAGUCUGUCCGGUGAUGAAGAAGCUAG             GUU GUUG                                                                                                             C             ||| ||||                                                                                                             G             CGG UAUG                                                                                                             C AGUUCUUUGUCU   G    CUCUGUCAUAUGGUUCACUUUCUUUGUGAGCUGAUGUAGAAGCUGAGACGUUAGCUUCUGUAAUUCUUCAACCGACAACAACAGUCGUCUGAUAGCCAGAUGAGCCAGU |
Stem-loop sequence | UGUUGUUGUCAGUAGACUAUCGGUCUACUUGGUCAGCGCUAGCUUCUUCCUCACCGGACAGGCUAAACUUCUGCAGCUUCUCCACUAGAUUAGUCUGUCCGGUGAUGAAGAAGCUAGCGCUGACCGAGUAGACCGAUAGUCUGCUGACAACAACAGCCAACUUCUUAAUGUCUUCGAUUGCAGAGUCGAAGAUGUAGUCGAGUGUUUCUUUCACUUGGUAUACUGUCUCGUAUGGGCUCUGUUUCUUGA |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |