| ncRNA ID | bra-miR396-3p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA8:8319788-8319949 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 25 - GCUCAAGAAAGCUGUGGGAAA - 45 |
| Stem-loop(if miRNA) |
CAU ---- A A -C --AUUUCCCUU U CCAAAAU GAAGAUCCUG GUUAU UUUUUCCACAGCUUUCUUGA CUUU UUUUUC AU UUAGAG A |||||||||| ||||| |||||||||||||||||||| |||| |||||| || |||||| A CUUUUGGGAC CAGUA AAAAGGGUGUCGAAAGAACU GAAA AAAAAG UA AAUCUC C CUU UUAA C C AA AUCUCACAAUU C UAAAAAU |
| Stem-loop sequence | CAUGAAGAUCCUGGUUAUAUUUUUCCACAGCUUUCUUGAACUUUCUUUUUCAUUUCCCUUAUUUUAGAGCCAAAAUAACUAAAAAUCUCUAACAUUUAACACUCUAGAAAAAAAAAAGCUCAAGAAAGCUGUGGGAAAACAUGACAAUUCAGGGUUUUCUUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009117868.2 |
|
2.5 | PREDICTED: Brassica rapa TATA-binding protein-associated factor BTAF1 (LOC103841344), mRNA | TATA-binding protein-associated factor BTAF1(LOC103841344) | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |