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BaseInfo

ncRNA ID novel_gma_miR1343
Species Glycine max
Class miRNA
Genome position Chr19:46825838-46825921 [+]
Reference genome Glycine_max_v2.0
Source SRR1451643
Length 24
Mature sequence(if miRNA) 1 - UAAAAUCAACUUAUGCACUUCAAC - 24
Stem-loop(if miRNA) --                    C       A      UUUCU
  UAAAAUCAACUUAUGCACUU AACUUUU UAGAAG     C
  |||||||||||||||||||| ||||||| ||||||
  GUUUUAGUUGAAUACGUGGA UUGAAAA AUCUUC     U
GA                    A       C      UAUCC
Stem-loop sequence UAAAAUCAACUUAUGCACUUCAACUUUUAUAGAAGUUUCUCUCCUAUCUUCUACAAAAGUUAAGGUGCAUAAGUUGAUUUUGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006576747.2
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |||-||||||||||||||||||||
targets:946   GUU-AAGUGCAUAAGUUGAUUUUA   968

0.0 PREDICTED: Glycine max uncharacterized LOC100799012 (LOC100799012), mRNA uncharacterized LOC100799012(LOC100799012) coding protein psRNATarget
XM_006574366.2
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  *||-||||||||||||||||||||
targets:1392   CUU-AAGUGCAUAAGUUGAUUUUA   1414

0.0 PREDICTED: Glycine max uncharacterized LOC100798622 (LOC100798622), transcript variant X1, mRNA uncharacterized LOC100798622(LOC100798622) coding protein psRNATarget
XM_003527585.2
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |||-||||||*|||||||||||||
targets:2211   GUU-AAGUGCCUAAGUUGAUUUUA   2233

1.0 PREDICTED: Glycine max MLO-like protein 9 (LOC100780855), mRNA MLO-like protein 9(LOC100780855) coding protein psRNATarget
BT095764.1
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |**|||||*|||||||||||||||
targets:1058   GCCGAAGUACAUAAGUUGAUUUUA   1081

1.0 Soybean clone JCVI-FLGm-15K19 unknown mRNA NA coding protein psRNATarget
XM_003518975.3
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |**|||||*|||||||||||||||
targets:1108   GCCGAAGUACAUAAGUUGAUUUUA   1131

1.0 PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X3, mRNA binding partner of ACD11 1(LOC100805907) coding protein psRNATarget
XM_006574485.2
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |**|||||*|||||||||||||||
targets:1129   GCCGAAGUACAUAAGUUGAUUUUA   1152

1.0 PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X2, mRNA binding partner of ACD11 1(LOC100805907) coding protein psRNATarget
XM_006574484.2
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |**|||||*|||||||||||||||
targets:1141   GCCGAAGUACAUAAGUUGAUUUUA   1164

1.0 PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X1, mRNA binding partner of ACD11 1(LOC100805907) coding protein psRNATarget
XM_014775014.1
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |*|*|||||||*||||||||||||
targets:3459   GGUAAAGUGCAGAAGUUGAUUUUA   3482

1.5 PREDICTED: Glycine max uncharacterized LOC100799545 (LOC100799545), transcript variant X3, mRNA uncharacterized LOC100799545(LOC100799545) coding protein psRNATarget
XM_014775561.1
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |||||=||*|||||||||||||||
targets:1822   GUUGAGGUACAUAAGUUGAUUUUA   1845

2.0 PREDICTED: Glycine max protein IQ-DOMAIN 1-like (LOC100780294), transcript variant X4, mRNA protein IQ-DOMAIN 1-like(LOC100780294) coding protein psRNATarget
XM_006579763.2
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |||||=||*|||||||||||||||
targets:1868   GUUGAGGUACAUAAGUUGAUUUUA   1891

2.0 PREDICTED: Glycine max protein IQ-DOMAIN 1-like (LOC100780294), transcript variant X2, mRNA protein IQ-DOMAIN 1-like(LOC100780294) coding protein psRNATarget
XM_006579764.2
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |||||=||*|||||||||||||||
targets:1875   GUUGAGGUACAUAAGUUGAUUUUA   1898

2.0 PREDICTED: Glycine max protein IQ-DOMAIN 1-like (LOC100780294), transcript variant X3, mRNA protein IQ-DOMAIN 1-like(LOC100780294) coding protein psRNATarget
XM_014775560.1
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |||||=||*|||||||||||||||
targets:2310   GUUGAGGUACAUAAGUUGAUUUUA   2333

2.0 PREDICTED: Glycine max protein IQ-DOMAIN 1-like (LOC100780294), transcript variant X1, mRNA protein IQ-DOMAIN 1-like(LOC100780294) coding protein psRNATarget
AK286967.1
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  *||-||||*|=|||||||||||||
targets:556   AUU-AAGUUCGUAAGUUGAUUUUA   578

2.0 Glycine max cDNA, clone: GMFL01-41-C10 NA coding protein psRNATarget
XM_006582823.2
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  ||||||||*|||||*|||||||||
targets:1015   GUUGAAGUACAUAAAUUGAUUUUA   1038

2.5 PREDICTED: Glycine max phosphopantothenoylcysteine decarboxylase-like (LOC100778368), transcript variant X2, mRNA phosphopantothenoylcysteine decarboxylase-like(LOC100778368) coding protein psRNATarget
XM_006595003.2
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  |||||=*||||||||||||||||*
targets:4386   GUUGAGCUGCAUAAGUUGAUUUUC   4409

3.0 PREDICTED: Glycine max flowering time control protein FPA-like (LOC100810601), transcript variant X2, mRNA flowering time control protein FPA-like(LOC100810601) coding protein psRNATarget
XM_014774850.1
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  ||||==*||=||||||||||||||
targets:228   GUUGGGAUGUAUAAGUUGAUUUUA   251

3.0 PREDICTED: Glycine max calcium-binding mitochondrial carrier protein SCaMC-2-B-like (LOC100801703), transcript variant X8, mRNA calcium-binding mitochondrial carrier protein SCaMC-2-B-like(LOC100801703) coding protein psRNATarget
XM_006578680.2
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  ||||==*||=||||||||||||||
targets:231   GUUGGGAUGUAUAAGUUGAUUUUA   254

3.0 PREDICTED: Glycine max calcium-binding mitochondrial carrier protein SCaMC-2-B-like (LOC100801703), transcript variant X6, mRNA calcium-binding mitochondrial carrier protein SCaMC-2-B-like(LOC100801703) coding protein psRNATarget
XM_014769316.1
ncRNA:24   CAACUUCACGUAUUCAACUAAAAU   1
  ||||||*|*=||||||||||||||
targets:559   GUUGAAAUUUAUAAGUUGAUUUUA   582

3.0 PREDICTED: Glycine max protein DEHYDRATION-INDUCED 19 homolog 5-like (LOC100801801), transcript variant X3, mRNA protein DEHYDRATION-INDUCED 19 homolog 5-like(LOC100801801) coding protein psRNATarget
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