ncRNA ID |
zma_circ_000170 |
Species |
Zea mays |
Class |
circRNA |
Genome position |
2:203908295-203912599[+/+] |
Reference genome |
AGPv3.22 |
Source |
PlantcircBase
|
Method |
SMALT and Segemehl |
Type |
exonic |
Splice junction sequence |
CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCACAAGCACGGCATGCTGGGGGTGTACCTGCAGCGGTCGACGGTGCTGCGTCGACCACGCAGATCGTGTGCGGCCAGCTCGGCAACGTCCAGCTCGCCGCCGCCTCCCTCGGCAACAACGGCATCCAGGTCTTCGCCTACGGCATCATG |
Tissues |
shoot |
Exon boundary |
Yes-Yes |
Splicing signals |
AG-GT |
circRNA sequence |
NA |
Genomic sequence |
CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCACAAGCACGGCATGCTGGGGGTGTACCTGCAGCGGTCGACGGTGCTGCTGATGGCCACCGCCGTGCCTCTGACCGTGGTGTACGCCTTCTCGGCGCGCATCCTGGTGCTCCTGGGCGAGTCGGAGCGCATCTCCAGGGCCGCCGCCGTGTTCGTGTACGGGCTCATCCCGCAGATCTTCGCGTACGCGGCCAACTTCCCCATCCAGAAGTTCCTGCAGGCGCAGAGCATCGTGGCGCCCAGCGCCTACATCTCCGTGGCCACGCTGGGGCTCCACCTGGGCCTCAGCTGGCTCGCCGTCTACCGGCTGGGCCTGGGCCTGCTGGGCGGCTCGCTCGTGCTCAGCTTCAGCTGGTTCGTCATCGTCGCGGCCCAGTTCGCGTACATCGTCACCAGCCCCCGGTGCAGGGACACGTGGACCGGGTTCACAATGCAGGCCTTCTCCGGCCTCGGCACCTTCTTCAAGCTCTCCGCCGCGTCCGCCGTCATGCTGTGCCTCGAGACATGGTACTACCAGATCATCGTGCTCATCGCCGGCCTGCTCAAGAACCCGGAGATCTCGCTCGACTCCCTCTCCATATGGTAAGTATAGTATTATTCTTATTAGCAGCGTTTTTTGGGTGTGGATGTGTGCTGTTCTTCTTAATCATTTTCCATATGGCTTGATCCTCCAGCATGACCGTGAACGCATGGGGTGTTTATGATATCCGTGGGCTTCAACGCCGCGGCGAGCGTGCGGGTCGGGAACGAGCTCGGCGCGGGCAACCCGAGGGCGGCGTCGTTCTCGGTGCTGGTGGTGACGTCGCTGTCGTTCGCCGTGTCGGCGGTGTGCGCCGTCGCCGTGCTCTGCCTCCGCGACCAGCTGAGCTACCTGTTCACGGGCGGCGAGGCCGTGGCTCGCGCCGTGTCCGACCTCTGCCCGCTCCTCGCCCTCACGCTCGTCCTCAACGGCGTGCAGCCAGTGCTCTCAGGCGTCGCCGTGGGCTGCGGGTGGCAGGCCTTCGTGGCGTACGTGAACGTCGGCTGCTACTACGTCGTCGGCGTGCCGCTCGGCGTCTTCCTCGGCTTCTACCTCGACCTCGGCGCCAAGGTAATAATAAACGCAAGCAAGCAGACCAGACGACAGACGTCCAGAGCAGCAGACCATGTGATAACTTTAACTGCGCGTCTGCGTGCGTGCAGGGCATTTGGAGCGGCATGGTCATCGGGGGAACCATGATGCAGACGCTCATCCTGCTCTGGGTCACCTTCAGAACAGACTGGACCAAGGAGGTGAATGCCCGGCCTTTACATGCTTTGCTCAGCTCCGATGCAGTCACTGCCATGATATCGCCATCCTCGCACTCGCGCTGGTCTCTACGAACAGAGACCTGAAATGGTGGATATGCCTGATGTGTCCTGTTCTGACTTGTGACTTCAACTGCAGGTGGAGAACGCCAGGGCGAGGCTGGACAAGTGGGACGACAAGAAGCAGCCCCTCCTAGCCTAGAAGAAGACTGATTGAAGGTCACTGTAGCGCGCGCTGATGGACCTTTTTTTGGCGATGATTGAGAGACCACACCAGGCGCGCGTCGGAGGGGATGCAACGCAACGCAACGCAATCATTTGGGTTTTGAAGCTATTTAATATTATCGCATTATAGAGTGTGCGCGTGCAGTTTCGAGTGATTAAAGTTTTGTTACGCTTTCTTCGGTGTCAGCTCCAACTTAGGGCGACTAGATGCGACCATCACACCAGGGTTTGGACCGTGGTGGGTGGATTCTATTCGTTTTTTTTTAAGCACAAATATGTCTAGGGCGAAGGAAAAAAATGTAGTGTGCAATTATTGTTTCTTGAGCTCTCAATAAATCTCACGATTCTCACGAGAAACCCTCTTGCTCCACAAAAACCAGCTTCCAGCAAAATAAGGATCCGTGTGTACACTCATCCAGTTTCTCGTAGAAACGTTTCACATCCAGATTTTTTCTGAAATGTTTTTCATCTCCCATTTTTTTGATTTATATATTACATCCTATGGAGGTGACTCATTGTAGTATTTTCCTTCACACGTGTATGTGTACTTATAGTTTGAAGGCTACAACTAGGAAAAAAAAGAATGTCGGCTCGTCTCTTCAAGCTTAAAAAAAAGAAGAGACTGTTCGGTTTTTGAAAGCTCATGTTGAACTCCAATACCAATTCTGATTTTTAAAGCTGAAGCTTGAAAATTTAAAGTAATTAAAAAAACACTGTAACCCTAAGTCTTCAGCCTCGAAAAGGTAGCTGTAATATAACGATTTTTATATATGATCAGTTTTTTTCATATGTTCTTTAAATAATAGTTGATATACATATAGGTTACAAGAAGTTGCTTAAATCAGCCCGAGGCACTTCCAATTGTATCTCTTTCACACATCAAATATTCTCTCCCATAGTCCCATCTATGGGTGGGATATGGTACTCCCGACTTAGCCCCTGTTTGATTGGCATTATAATTCGCTCATATTATATAATTTATTTATTTTTAAAATTAGTCGCGATATGTTCAGGCAACGTTTGGAACTTTGAACCCATAGGGATTTCAAAAATCCAGATAGAATCAAATCATAGAATTTTTAAAATCCTATCTAAACGCTATAGGATTCTAGCACACGTACACATACTTCAAATTAAAACCGCAAGAGATATTTTCCTCCGGAATCCGTGAATCGTCATTGGGCCTGTTTGTTTCGGCTTCTGGCAGCTTCTAGCCACCAAAAGCTGCTGCGGACTGCCAAACACTCAGCTTTTCAGCCAGCTTCTATAAAATTCGTTGGGGGCAAAAACCAACCAAAATCAACATAAACACATAATCAGTTGAGTCATTGTAATAGTAGGAATCCGTCACTTTCTAGATCATGAGCCCTATGAACAACTTTATATTCCTCCACACGTAATCGTAATGATACTCAGATTCTCACCACAGCCAGATTCTCCCCACAGCCAGATTTTCAAAAAAGCTAGTCAGAAAAAAAACTGAACCAAACAGGGCCATTGATGTCCCAAACATTGCACTATTCGTCTATTCCAAACAAAAAAAAAAGATGCTACCGCTCAACATCGGAGTGTACGACAAAAGAAAGCTCGGAATCTGAGAAAGGCGTACAGTACTACCAGCCGGCCAGAGGCACCTTTTAGCTGTAGCGCCGCGCCAAGAGGATGGCGCTTTACAACTTTTATTATACGGCCCAAAAGAAACCTTCACTTTAGTAAATCTTAAGAAGTCAAAATACTTACCTTAATCAAATATATAAAAATATTTATTTTTGCTCAGTATAAGTATTAGATGATGATTATTTTATTAATCATATCACTAGCTAGTACATATTTTCATAGTGTGACTTTGAAATACTAATACTGATTTTTATTTAAAAAAACTACTCTATTATTTAAATTTGAAACTGGCTGTCTCTATATCGTAAGACACTCCGGCTTACTTTTCTATCCTAAATTAAAAAAATGTACGTATCACTGTGATTGAAACAGAAGAGTTTAAACGCTTGCTGACAAGGGCCCTAAAAGGCGTATAGGATTATTGTCATATGCTAAACCGTCGTACCTTGTAGATTAGTATATAAATAATAGACGACTCAGGTTTAAACAGCAAAAGGCTTACCTCTCCGCCACTGCTAGCGCGAGCGTTAAAAATGCTCTCCGTATGCGTCCTTTCTCTCCACGCTTTGCAGCCAGCTTACGAGCCTGACTTTGTTTTGTTACTTTTTGAGACGCGAGATAGTGAGGTACTACCTGCCACTGTTGTCTTACATGCCACCACCACCCGAGCACGTGTCAGACTCAGGCATCACCCTTTGCCCGCCTCTCTTTGGTGGGATTCTTATCACAACCGCACACACCAAAAAGCAGAGACAAACTTATAAGAACTTTACGGCGTGCTATACCTATCAGGCTATCACTGGCTCTCCCCGTCAACTAAACTCTAGCCAGTGAGTGGATGATGGGTCGGACGGGTGACGGCCGCCGCCGCGACGTCGACGGCCGGCTGGAGGCGCTGCTCTCTGGCGCCGGCGGCGAGGAGCCGTGGCTCCGGCGCGTGGCGCTCGCGACGGCTCTGGAGCTGCGGCTGCTGGCGCCCCTGGCCGCGCCGGCCGTGGTGGTCTACATGCTCATCATCGTCATGTCGTCGACCACGCAGATCGTGTGCGGCCAGCTCGGCAACGTCCAGCTCGCCGCCGCCTCCCTCGGCAACAACGGCATCCAGGTCTTCGCCTACGGCATCATG |