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BaseInfo

ncRNA ID bra-miR396-5p
Species Brassica rapa
Class miRNA
Genome position chrA8:8319788-8319949 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 120 - UUCCACAGCUUUCUUGAACUU - 140
Stem-loop(if miRNA) CAU          ----     A                    A    -C      --AUUUCCCUU  U      CCAAAAU
   GAAGAUCCUG    GUUAU UUUUUCCACAGCUUUCUUGA CUUU  UUUUUC           AU UUAGAG       A
   ||||||||||    ||||| |||||||||||||||||||| ||||  ||||||           || ||||||       A
   CUUUUGGGAC    CAGUA AAAAGGGUGUCGAAAGAACU GAAA  AAAAAG           UA AAUCUC       C
CUU          UUAA     C                    C    AA      AUCUCACAAUU  C      UAAAAAU
Stem-loop sequence CAUGAAGAUCCUGGUUAUAUUUUUCCACAGCUUUCUUGAACUUUCUUUUUCAUUUCCCUUAUUUUAGAGCCAAAAUAACUAAAAAUCUCUAACAUUUAACACUCUAGAAAAAAAAAAGCUCAAGAAAGCUGUGGGAAAACAUGACAAUUCAGGGUUUUCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009142384.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:1191   ACGUUCAAGAAAGCAUGUGGAA   1212

3.0 PREDICTED: Brassica rapa growth-regulating factor 8 (LOC103864615), mRNA growth-regulating factor 8(LOC103864615) coding protein psRNATarget
XM_009128900.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:384   UCGUUCAAGAAAGCAUGUGGAA   405

3.0 PREDICTED: Brassica rapa growth-regulating factor 7 (LOC103852019), transcript variant X2, mRNA growth-regulating factor 7(LOC103852019) coding protein psRNATarget
JN698988.1
ncRNA:21   UUCAAGUUCUUUCGA-CACCUU   1
  **|||||||||||||-||||||
targets:693   CCGUUCAAGAAAGCUUGUGGAA   714

3.0 Brassica rapa subsp. pekinensis growth-regulating factor 2P mRNA, partial cds NA coding protein psRNATarget
JN698987.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:735   CCGUUCAAGAAAGCCUGUGGAA   756

3.0 Brassica rapa subsp. pekinensis growth-regulating factor 2J mRNA, partial cds NA coding protein psRNATarget
XM_009128899.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:708   UCGUUCAAGAAAGCAUGUGGAA   729

3.0 PREDICTED: Brassica rapa growth-regulating factor 7 (LOC103852019), transcript variant X1, mRNA growth-regulating factor 7(LOC103852019) coding protein psRNATarget
XM_018657727.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:629   UCGUUCAAGAAAGCAUGUGGAA   650

3.0 PREDICTED: Brassica rapa growth-regulating factor 8-like (LOC103861465), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018657726.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:635   UCGUUCAAGAAAGCAUGUGGAA   656

3.0 PREDICTED: Brassica rapa growth-regulating factor 8-like (LOC103861465), transcript variant X1, mRNA NA coding protein psRNATarget
JN698986.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:699   UCGUUCAAGAAAGCCUGUGGAA   720

3.0 Brassica rapa subsp. pekinensis growth-regulating factor 1 mRNA, partial cds NA coding protein psRNATarget
XM_009135456.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1011   CCGUUCAAGAAAGCCUGUGGAA   1032

3.0 PREDICTED: Brassica rapa growth-regulating factor 2 (LOC103858126), mRNA growth-regulating factor 2(LOC103858126) coding protein psRNATarget
XM_009135745.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:833   UCGUUCAAGAAAGCCUGUGGAA   854

3.0 PREDICTED: Brassica rapa growth-regulating factor 1 (LOC103858395), mRNA growth-regulating factor 1(LOC103858395) coding protein psRNATarget
XM_009139172.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1122   UCGUUCAAGAAAGCAUGUGGAA   1143

3.0 PREDICTED: Brassica rapa growth-regulating factor 8-like (LOC103861465), transcript variant X2, mRNA growth-regulating factor 8-like(LOC103861465) coding protein psRNATarget
XM_009140280.2
ncRNA:21   UUCAAGUUCUUUCGA-CACCUU   1
  **|||||||||||||-||||||
targets:1074   CCGUUCAAGAAAGCUUGUGGAA   1095

3.0 PREDICTED: Brassica rapa growth-regulating factor 2 (LOC103862578), mRNA growth-regulating factor 2(LOC103862578) coding protein psRNATarget
XM_009146225.2
ncRNA:21   UUCAAGUUCUUUCGACACCUU   1
  |=|**|||||||||||||||=
targets:642   AGGAACAAGAAAGCUGUGGAG   662

3.0 PREDICTED: Brassica rapa transcription factor bHLH74-like (LOC103868118), transcript variant X4, mRNA transcription factor bHLH74-like(LOC103868118) coding protein psRNATarget
XM_018658975.1
ncRNA:21   UUCAAGUUCUUUCGACACCUU   1
  |=|**|||||||||||||||=
targets:647   AGGAACAAGAAAGCUGUGGAG   667

3.0 PREDICTED: Brassica rapa transcription factor bHLH74-like (LOC103868118), transcript variant X2, mRNA NA coding protein psRNATarget
XM_009146224.2
ncRNA:21   UUCAAGUUCUUUCGACACCUU   1
  |=|**|||||||||||||||=
targets:648   AGGAACAAGAAAGCUGUGGAG   668

3.0 PREDICTED: Brassica rapa transcription factor bHLH74-like (LOC103868118), transcript variant X3, mRNA transcription factor bHLH74-like(LOC103868118) coding protein psRNATarget
XM_009146223.2
ncRNA:21   UUCAAGUUCUUUCGACACCUU   1
  |=|**|||||||||||||||=
targets:729   AGGAACAAGAAAGCUGUGGAG   749

3.0 PREDICTED: Brassica rapa transcription factor bHLH74-like (LOC103868118), transcript variant X1, mRNA transcription factor bHLH74-like(LOC103868118) coding protein psRNATarget

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).
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