Search result

BaseInfo

ncRNA ID novel_gma_miR1334
Species Glycine max
Class miRNA
Genome position Chr7:34470215-34470344 [+]
Reference genome Glycine_max_v2.0
Source SRR1294479
Length 24
Mature sequence(if miRNA) 1 - UGCCCUGAUAAUAUCGAUUUUGAC - 24
Stem-loop(if miRNA) --      G         A      -  GA   C     CAU   AA   --U          U  G
  UGCCCU AUAAUAUCG UUUUGA CU  AAC GAUGU   AAG  CAU   CAACAUCGGU UU U
  |||||| ||||||||| |||||| ||  ||| |||||   |||  |||   |||||||||| ||
  ACGGGA UAUUGUAGC AAAAUU GG  UUG CUACA   UUC  GUA   GUUGUAGCCA AA C
UC      A         C      C  -A   A     UCU   AC   UAU          C  A
Stem-loop sequence UGCCCUGAUAAUAUCGAUUUUGACUGAAACCGAUGUCAUAAGAACAUUCAACAUCGGUUUUGUCAAACACCGAUGUUGUAUAUGCACUUUCUACAUCAGUUAGGCUUAAAACCGAUGUUAUAAGGGCACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006588858.2
ncRNA:24   CAGUUUUAGCUAUAAUAGUCCCGU   1
  *|*|||=**|||||||||||||||
targets:540   AUGAAAGGGGAUAUUAUCAGGGCA   563

3.0 PREDICTED: Glycine max DNA-directed RNA polymerase I subunit 1-like (LOC100779532), mRNA DNA-directed RNA polymerase I subunit 1-like(LOC100779532) coding protein psRNATarget